KEGG   Sciurus carolinensis (gray squirrel): 124974870
Entry
124974870         CDS       T08117                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03030  DNA replication
ncar03410  Base excision repair
ncar03420  Nucleotide excision repair
ncar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124974870
   03410 Base excision repair
    124974870
   03420 Nucleotide excision repair
    124974870
   03430 Mismatch repair
    124974870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncar03032]
    124974870
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124974870
Enzymes [BR:ncar01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     124974870
    6.5.1.6  DNA ligase (ATP or NAD+)
     124974870
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     124974870
DNA replication proteins [BR:ncar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    124974870
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     124974870
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     124974870
   NER (nucleotide excision repair)
    Other NER factors
     124974870
   MMR (mismatch excision repair)
    Other MMR factors
     124974870
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR DUF1685
Other DBs
NCBI-GeneID: 124974870
NCBI-ProteinID: XP_047393787
EnsemblRapid: ENSSCRG00010024424
LinkDB
Position
Unknown
AA seq 924 aa
MQRSIMSFFYPTKEGKAKKPEKETTNNSREMEPPPKVALKERNGVLPESDSPVKRPGRKL
ARVLSSEGEEEDEALTPPKGQKPVQDSPQGSPPSPAMSSGNSPSLSNTSPMDISPSGIPK
RRTARKQLPKRSIEDVLEEQSEDTDREPKKRKLEEGEAPGEAESPRESPTEAEVVEMEEE
EEGKHPKTPPDPPEPPKAETPAKTENTAAPEAVSQQRSQEEDRSKPPPRAPRMLSSFFTP
RKPTVKTEVKEEESGAPGKDEAKGPLDPTSYNPAKNNYHPIEDACWTPGQKVPYLAVART
FEKIEEVSARLRMVETLSNFLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGIGDSVLL
KAVAQATGRQLEAVRAEAAEKGDLGLVAESSRSTQRLMLPPPPLTTSGVFAKFRDIARLT
GSASMAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQE
FPPAVVDAGKGRTAEARKTWLEEQCMILKQTFCEVPDLDRLVPVLLEHGLERLPEHCRLS
PGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHLLEGGEVKIFSRNQEDNT
GKYPDIINRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQV
CLYAFDLIYLNGESLVREPLSRRRQLLHEHFVETEGEFVFATSLDTKDTEQIAEFLEQSV
KDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRY
GGFLLAAYDEDSEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRADGAVAPDHW
LDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVAC
LYRKQSQIQNQQGAGSDSDPEDFY
NT seq 2775 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttctaccccacaaaagagggtaaagcaaagaaacct
gagaaggagacaaccaacaacagcagagagatggagccccctccaaaagtggcactgaag
gagcggaatggagtgctgcccgagagtgactcgccagtgaagaggccaggaaggaagctg
gcccgggtcctgagcagtgagggggaggaggaggatgaagccctcaccccgcccaaaggc
cagaagcctgtgcaagactccccacaaggctctcctcccagtcctgccatgtcttctggg
aacagcccctctctctccaacacctcccccatggacatctccccatccgggatcccgaag
cgtcgcacggctcggaagcagctcccgaaacgatcaattgaggatgtcctggaagagcag
agtgaggacacggacagagagcccaagaagaggaagctggaggaaggcgaggccccagga
gaagcagagtccccaagagaaagccccacagaggctgaggttgtagagatggaggaagaa
gaggaaggcaagcaccctaagacaccccctgaccctccagaacctcccaaagcagagacc
ccagcaaagacagaaaacactgctgcacctgaggcagtcagccagcagaggtcacaggaa
gaggaccggagcaagcctccccccagagctcccaggatgctcagcagtttcttcaccccc
cggaaaccaaccgtcaaaacagaagtgaaagaagaggagtcaggtgctccgggaaaggat
gaggccaagggacccctggacccaacaagctacaatcctgccaagaacaactaccacccc
attgaggacgcctgctggacaccaggccagaaggtcccgtatctggctgtggcccgcacg
ttcgagaagatcgaagaggtttctgctcggctccgcatggtggagacgctgagcaacttt
ctgcgctctgtggtggccctgtcacctccagacctcctccctgtcctctacctcagcctc
aaccgccttgggccaccccagcagggcctggagcttggcattggtgacagtgtcctcctc
aaggcagtggcccaggccacaggtcggcagctggaggcagtgcgggcggaggcagccgag
aagggtgacctggggctggtggccgagagcagccgcagcacccagaggctcatgctgccg
ccgccgcccctcaccacctccggggtcttcgccaagttccgtgacatcgcccggctcact
ggcagtgcttccatggccaagaagatagacatcatcaaaggcctcttcgtggcctgccgc
cactcggaagcccggttcattgccaggtccctgagtggacggctgcgccttggactcgca
gagcagtcagtgctggccgcccttgcccaggccgtgagcctcacacccccaggccaagag
ttcccccctgctgtggtggatgctgggaagggcaggactgcagaggccagaaagacgtgg
ctggaggagcaatgcatgatcctgaagcagacgttctgcgaggtgcccgacctggacaga
ctcgtccctgtgctgctggagcatggcctggagcgtctgccggagcattgcaggctgagc
ccaggggtgcccctgaaaccaatgttggcccatcccactcggggcgtcagcgaggtcctg
aaacgcttcgaggaggcagccttcacctgcgagtacaagtacgacggacagagggcacag
atccaccttctggaaggcggggaggtgaagattttcagcaggaatcaggaagataacaca
ggaaagtaccctgacatcatcaaccgcattcccaagattaaactcccgtcagtcacatcc
ttcatcctggacacagaagctgtagcttgggaccgggaaaagaagcaaatccagccattc
caagtgcttaccactcgcaaacgcaaggaggtagatgcctcagagatccaggtgcaggtg
tgtctttacgccttcgacctcatctacctcaacggagagtccctggtccgtgaacccctg
tcacgacgccggcagctgctccatgagcacttcgtggagacggagggtgagtttgtcttc
gccacctccctggacaccaaggacactgagcaaatcgctgagttcttggagcagtcggtg
aaagactcctgcgaggggctgatggtgaagaccctggatgtcgacgccacctacgagatc
gccaagaggtcacacaactggctcaagctgaagaaggactacctggatggcgtgggcgac
acgctggacctcgtggtgatcggcgcctacctgggccgggggaagcgggccggccggtat
gggggcttcctgctggccgcctacgacgaggacagtgaggagctgcaggccatatgcaag
cttggaaccggcttcagcgatgaggaactggaggagcaccaccagagcctgcaggccctg
gtgctacccaccccacgcccctatgtccgggccgacggtgccgtggcccctgaccactgg
ctcgaccccagcgctgtgtgggaggtgaagtgtgcggacctctctctctcccccatctac
cctgctgcccggggcctggtggacagcgagaaaggcatctcacttcgcttccctcggttc
attcgtgtccgtgaagacaagaagccagaggaagccaccaccagtgcccaggtggcctgt
ctgtaccggaaacaaagtcagattcagaatcaacaaggtgcaggctcagactccgaccct
gaagatttctactaa

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