Sciurus carolinensis (gray squirrel): 124976042
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Entry
124976042 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 6-like
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124976042
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124976042
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
124976042
NCBI-ProteinID:
XP_047394599
LinkDB
All DBs
Position
2:17160610..17367117
Genome browser
AA seq
2724 aa
AA seq
DB search
MKMKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDCSTDQEEKIEDVASHRLPQKD
LYAAEEEANTLFPRKMMSHNGMEDSGGGGTGVKKKRKKKEPGEQEGAAKGSKDKEPKPKR
KREPKEPKEPRKAKEPKKAKEPKEPKQKDGAKKARKPREASGTKEAKEKRSCADSTARTK
SKKASKEQGPTPVERKKKGKRKSETTVESLELDQGLPNTSLRSPQESTESADSQKRRSGR
QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS
KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH
IFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDP
AKVKEFESLQILPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRK
NCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYH
GSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEA
HRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG
DLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFS
FLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQ
AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA
AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK
AVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGA
YGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDP
NFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPT
RSRRLNDKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVY
CVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLLPELKN
ADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEILGEAADKAFEGTSAREL
DVPLPDIDYMEIPVDWWDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKSL
SAEQGVTDVNSDIPERGSTDKEDNAEDKLDGLQKQTESSSDGGDGIFGEKKDDSRAAQDG
SDPDKSPWPVPSALTARLRRLVTVYQRCNRKELCRPEILGPGNQGYWVQEEMFRRTSEMD
LINKEAQKRWTRREQADFYRTVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDENLEHYFY
SFVAMCRNVCRLPTWKDGGEENVLSPDATIYVEPITEERAARTLYRIELLRKVREQVLRC
PQLHERLXLCRPSLYLPVWWECGKHDREPAHRTAKHGLNRTDYYIMNDPQLSFLDAYRNY
AQHKRTDTQAPGSLCCLYQANSKLYESLTYTQMSRTSESLESEPEXSGKSRNRDDHLVLP
GGSLPDMTCENXISKIQDVISINHEESLLPESLDNMMYGKKVXSSEPGSFQESQSTNTES
RKDAIVISASRDGSCQPGGHETAITSGSCLRSSLEEGVAQMNIKMKKHLXYLFQRKESPA
VNETGQRPESXGSXRSQCLASPVLDAGNESGFVDMCSLSVCDSXRNLSSDQQLIDLLKTK
XLESKLILNQNQSDEEEEEEENEEETLAVAAGTRDRSEVSQLTEPAANISREKSQDFHLD
EAKKGSLEAISQTPGPQRAFPPAACQCHCKHMERWHMALGVMNLEVEKPRVYNPDLYRSK
XRITAVEGEPTTVPSEPFKVRHELLKEPWKERAEGKKXFSTYTPEGSEPKSEDMDFENKD
DYDRDGTCHSQDYPGKYSEEESKSSASGITXDLGEDPQETRAPTIAQLLQEKTLYSFSEW
PKDRVIINRLDNICHVVLKGKWPSSQQYEPSGTLPTPVLTSSAGSRNGLSEPEVAEHSFS
NGAALAAQIQKESFLAPVFTKEEQKHRRPYEFELERDAKARSLEQFSATHGPPPHRPQCW
HGESAIDLSCSSEGXPGATSPFPVSASTPKIGAIGSLQGALGMDLSGILQAGLIHPVTGQ
IINGXLRRDDAATRRRRGRRKHAEGGMDLIFLKEQTLQAGNLEIHEDPGQATLSTTHPEG
PGPVTSAPEPAATTNNQTEKAVPSKSLLDWLRQQADYSLDMPGFGANFSDKPKQRRPRCK
EPGKLDISSLSGEERVPAVPKEPGLRGFLPENKFNHTLAEPVLRDAGPRRRGRRPRSELL
KAPAIVADSPSGMGPLFMNGLIAGMDLVGLQNVRNMPGIPLTGLVGFPAGFATMPTGEEV
KSTLSMLPMMLPGMAAVPQMFGVGGLLNSPMATACTSPAPASLSSTTKSGTSATEKTAED
KPSSHDVKTDMVAEDKPGPSPFSDQSEPTITASSPVAFNPFLIPGVSPGLVYPSMFLSPG
MGMALPAMQQARHSEMVGLENQKRKKKKTKGDTPNPNPEPAPGCEREPGSDQNYTESSAP
LPPEREHMAQAGEGGLKDSSNDTN
NT seq
8175 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaaaatacagaagaaagagaagcagttgtcaaatttaaaggttttgaatcac
tccccaatgtctgatgcctctgtcaattttgactataaatccccatccccatttgactgc
agtactgatcaggaagagaaaattgaagatgttgccagtcaccgtctgccccagaaggac
ctgtatgctgctgaagaggaagctaataccctttttcctaggaaaatgatgtcccataat
gggatggaggacagtggaggtggaggtactggagtaaaaaagaaacggaaaaaaaaggag
ccaggagagcaagagggtgcagcaaagggaagcaaggacaaggagcccaagccaaagagg
aagcgagaacctaaagagccaaaggaacccaggaaggccaaggagccgaagaaggccaag
gagcccaaggagcccaagcagaaggatggtgcaaagaaggcacggaagccccgggaggcc
tcaggcactaaggaggccaaagagaagcggagctgtgcagattctacagccaggactaag
tccaagaaggccagcaaggagcaaggaccaaccccagtggagagaaagaagaaaggaaaa
aggaaaagtgaaaccacagtggagagtttagagctggatcagggcctgccgaacacatcc
ctgcggagtcctcaggagtccactgagtctgcagacagccagaaacgacgctcaggacga
caagtaaaacgcagaaaatataacgaggacctggacttcaaagtagtggatgatgatggg
gaaacaattgctgttcttggagctggccgaacatctgcactctcagcttctacactggct
tggcaggcagaggagcctccagaagatgatgcaaacatcattgagaagatcctggcatct
aagactgtccaggaggttcacccaggagaacctccattcgacctagagctgttctacgtt
aagtatagaaatttttcctacttacattgtaaatgggccacaatggaagagctggaaaag
gatcctcgcatcgcacagaagatcaagcgatttaggaataagcaagcccagatgaagcac
attttcacagagcctgatgaagacttgttcaacccagactatgtagaagtggatcgcatc
ttggaagtggcccacaccaaggatgcagagacaggggaggaggtgacacattacctggtg
aagtggtgctccctgccatacgaagaaagcacttgggaactggaggaagacgtggatcct
gcaaaagttaaagaatttgagtctcttcaaattctccctgaaattaagcacgtggaacgg
cctgcttcagactcctggcagaaacttgagaagtctcgcgaatataagaacagtaaccaa
cttcgggaataccagcttgagggaatgaactggcttctttttaattggtataacagaaaa
aactgtattttggctgatgagatgggcctagggaaaaccatccagtccatcacattcctt
tcagaaatatttcttagaggaatccacggcccttttctcatcattgcccctctctccacc
atcactaactgggagcgagagttccggacgtggacagagatgaatgccattgtgtaccat
ggcagccagatcagcaggcagatgatccagcagtatgaaatggtgtacagagatgcacag
ggaaaccccctctcaggagtcttcaagttccacgttgtcatcacaacatttgagatgatc
ctggcagattgcccagagctgaagaagattcactggagctgtgtgataattgatgaggcc
cacagattgaagaataggaactgcaaacttctggaggggctaaagctcatggctctggaa
cataaagtactgctcactggaacacctttgcagaactctgtggaagagctcttcagtttg
ctaaattttttggagccatcacagtttccttcagagactgctttcttggaggagtttgga
gatctgaagacagaggaacaggtaaagaaactgcagtctatcctaaagccaatgatgctt
cggcgcctgaaagatgatgtggaaaagaaccttgctcccaaacaagagacaatcattgaa
gtagaacttaccaatatccagaaaaagtactaccgtgccatcctggagaaaaacttttcc
ttcttgaccaagggagcaaatcagcacaacatgcccaatcttatcaacactatgatggag
ctgagaaagtgctgtaaccatccctacctgatcaatggggcagaggaaaaaattctagaa
gatttccgaaaaacccacagccctgatgcccctgattttcagctacaggccatgattcag
gcagcagggaagctggtactgattgataaactgctccctaagctaattgctggtggccac
aaagtcctcatcttctctcagatggtacgctgcctggatatcctggaagattatctcatc
caaaggagatacacgtatgagcgaattgatgggcgagtacggggaaatctacgccaggca
gccatcgaccggttctgtaagccagactcagaccgctttgtctttcttctgtgcaccaga
gcgggaggcctggggatcaatctcacagctgctgatacttgcatcatatttgattctgac
tggaacccacaaaatgacttgcaggctcaggcccgatgtcaccgcataggccaaagcaaa
gccgtcaaggtgtatcgcctcatcactcggaactcctatgagcgggaaatgtttgataag
gccagcctaaagctgggcctagacaaggctgtacttcaggatatcaacagaaagggcagc
accaatggagtgcagcagctctcaaaaatggaggtggaggacttgctccggaaaggtgct
tatggagctttgatggatgaggaagatgaaggctccaaattttgtgaagaagacatagac
cagattcttcagaggagaacccatacgatcaccatccagtctgaggggaaagggtccact
tttgccaaggctagctttgtggcttcaggaaacagaacagacatttccttagatgatcct
aacttttggcagaaatgggctaaaatagctgaactagacactgaagcaaagaatgaaaag
gaaagcttagtgattgaccgacctcgtgtgagaaagcagaccaaacactacaactcattt
gaggaagatgagctcatggagttttcagagttagacagcgactcagacgaaaggcccacg
cgatccaggcgcctcaatgacaaaaccaggcgctacctacgagctgaatgcttccgagta
gagaagaacctgcttatctttggctggggccggtggaaggacatcctaactcacggacga
ttcaagtggcacctgaatgagaaggacatggagatgatttgccgggccctgctggtatac
tgtgtcaagcattataaaggggatgagaagatcaagagtttcatttgggaactaatcacc
cctaccaaagatgggcaggcccagaccctccagaaccactcagggttgtcagcccctgtc
cccagagggaggaaagggaagaagacaaagaaccagttactgctccccgaactaaagaat
gcagactggctagccacctgcaaccctgaggtggtcttgcatgatgatggctacaagaaa
cacctcaaacagcactgcaataaggtccttttgcgagtacggatgctgtactacctaaaa
gctgaaatactgggagaagcagctgataaagcatttgagggaacttctgccagggagctc
gatgtgcctctgcccgacatcgactacatggagatcccagtggattggtgggatgctgag
gctgataagtcccttctcattggcgtattcaagcatggttatgagagatacaatgccatg
agagcagacccagcgctttgctttctggagaaagttggaatgccagatgagaagtccctt
tctgcagaacagggcgttacagatgttaactcagacattcctgaaagaggcagcacggat
aaagaagacaatgccgaggacaaattagatggccttcagaaacaaacggaaagttccagt
gatggaggcgatggcatatttggcgaaaagaaggatgacagccgggcagcccaggatggc
tccgacccagacaaatcgccctggccagttccatctgctctcacagctcgtctccggcgt
ctggtcactgtgtaccagcgctgcaaccgcaaggaactctgccgacctgaaatcctggga
ccaggtaaccaaggatactgggttcaggaggaaatgttcaggagaacctcagaaatggac
ctcatcaacaaggaagcccagaagaggtggactaggagagagcaagcagatttctataga
acagtatcttcctttggcgttgtttatgatcaagaaaagaaaaccttcgattggacccag
ttccgcatcatttcccgtttggacaagaagtcagatgagaacctggaacactatttttat
agttttgtggccatgtgccggaatgtctgtcgtctgcccacgtggaaagatggtggtgag
gaaaacgttttgtcccctgatgccaccatctatgttgaacccatcacagaggagcgggct
gctagaactctgtaccgcattgaactgttacggaaagttcgtgagcaggtgctcagatgt
cctcagctgcacgagcgccttncgctctgtaggcccagcctctaccttccagtctggtgg
gagtgtggaaagcatgatcgagaacctgctcatcgcactgccaaacacgggctcaaccgc
actgactattacatcatgaatgacccccagctgtccttcctagatgcctatagaaactat
gcccagcataaaagaactgacacccaggcaccaggaagtctctgttgcctttaccaggcc
aactccaaactatatgaatctcttacctatactcaaatgagtaggacttcagagtccctt
gaaagtgaacctgagnnatctggtaaaagtagaaacagagatgatcatcttgttctgcct
gggggcagcttacctgacatgacttgtgaaaacnttatttctaaaattcaagatgtcatt
tccatcaaccatgaagaaagtctgctgcctgagtccttggataatatgatgtatggtaag
aaggtgnnctcatccgagccaggctcttttcaagagagtcaaagtaccaatacagaatct
agaaaagatgccattgttatctcggcaagcagagatgggagctgccagcctggtggccat
gagacagcaataacttcaggctcctgtcttaggagtagcttagaagaaggagtagctcag
atgaacattaaaatgaaaaaacatttgtagtatctatttcaaaggaaggagagccctgcc
gtaaatgagacagggcagagacctgaaagctagggcagcnntagaagccaatgcttagct
tcccctgtcctagatgcaggaaatgaaagtgggtttgtagatatgtgcagtcttagtgtc
tgtgactccnaaagaaacctctcatctgatcaacaattgattgatttattgaaaacaaaa
nngttagaaagtaaattaattctgaatcagaaccagagtgatgaagaggaggaagaggag
gaaaatgaggaagaaaccttagcagtggcagcaggcacaagagacagatcagaggtttcg
cagctcactgagcctgctgcaaatatctcaagggaaaagagccaagacttccatctggat
gaagccaagaaaggaagcctggaggcaataagccagactcctggaccacagagggccttt
cctccagcagcttgtcagtgccactgcaaacacatggagaggtggcacatggccttggga
gtgatgaatttggaagtggagaaacccagggtttataacccagacctatacagaagcaaa
ngccgtatcactgcagtggaaggtgagcccactactgttccatcagagccatttaaagtg
agacatgaacttttaaaagaaccttggaaagaaagggcagaggggaaaaaanagttctcc
acgtatactcctgaagggagtgagcccaagtccgaagacatggattttgagaataaagat
gattatgatcgagatgggacctgccatagtcaagactacccaggaaagtactctgaagag
gaaagcaagagctcggcatcaggcatcacangggaccttggggaagacccccaggagacc
cgagctcctaccattgctcagctactgcaggaaaaaaccctttattccttctcagagtgg
ccaaaggatcgtgtgataattaaccgcctggataacatctgccatgtggtgttaaagggg
aaatggccctccagccagcagtacgagccctcgggtacactgcccacccctgtcttaact
agcagtgctggttctcgaaatggcctctcagagccagaggtggcagaacacagtttcagc
aatggggcagcgttggcagcccagatccagaaggagagcttcttagctccagtattcaca
aaagaggaacaaaagcacagacgtccctatgagtttgagttggagagggatgctaaggct
cggagcctagaacagttctctgcaacccacgggccacccccccatcgtcctcaatgctgg
catggggagtcagctatagatctctcctgctcatcagaggggntcccaggagccacatcc
ccctttccagtgagtgccagcacccctaagattggggctatcggttcacttcaaggagcc
cttggcatggacttgtctgggattctacaagctggcctgatccacccagtgactggacag
atcatcaatgganagcttagaagagacgatgctgccacacggaggcggagagggagacgg
aaacatgcagaaggtgggatggacctcatctttttgaaggagcaaacacttcaggcagga
aatcttgaaatccatgaagacccagggcaggccaccctgagcaccacacaccctgaaggg
cccggacctgtcacctcagcccccgagccagcagctaccaccaacaaccagactgagaaa
gctgttcccagcaagagtctgcttgactggctgcggcagcaggctgactactccttagac
atgcctggctttggggcaaatttttcagacaaaccgaagcagaggaggccacgctgtaaa
gaacctggaaaattagacatcagctctctgagtggagaagagagggttcctgctgtccct
aaggagccaggactgagggggtttcttccagaaaacaaattcaaccacaccctggctgag
cctgttctccgggatgcaggcccccgcaggagggggagacggcctcggagtgaactcctg
aaagctcccgccattgtggcagactctccctctggaatggggccactgttcatgaacggg
cttattgccgggatggacctggtgggattgcagaatgtgaggaatatgccaggcatcccc
ctcacagggctggtgggcttcccagctggctttgccaccatgcctacaggtgaagaggtc
aagagcaccctgagcatgctgcccatgatgctgccgggaatggccgcagtgccccagatg
tttggtgttggaggactcctcaactcacctatggcgactgcctgcacgtcccctgctcca
gcgtctctctcaagcacaacgaaaagtggcacatcagccactgaaaagactgcagaggac
aagccaagcagccatgatgtaaaaactgacatggtagctgaagacaagcctggtcctagt
ccgttttctgatcagtctgaacccacaataactgctagtagtcctgtggcttttaaccca
tttctcatcccaggagtgtctcctggacttgtttacccatccatgtttctctcccctggc
atgggcatggctttgccagccatgcagcaggccagacactctgaaatggtcggtctagag
aaccagaagagaaagaagaagaaaacaaaaggggacaccccgaaccctaacccagagcct
gctcctgggtgcgaaagggagccaggcagtgatcagaactacactgagtccagtgcccct
ttgcccccagagagagaacacatggcacaggctggggaagggggactgaaagactccagc
aacgacaccaattag
DBGET
integrated database retrieval system
