Sciurus carolinensis (gray squirrel): 124976838
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Entry
124976838 CDS
T08117
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04140
Autophagy - animal
ncar04148
Efferocytosis
ncar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124976838
04148 Efferocytosis
124976838
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124976838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124976838
Membrane trafficking [BR:
ncar04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124976838
Hops complex
124976838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
124976838
NCBI-ProteinID:
XP_047395764
EnsemblRapid:
ENSSCRG00010004940
LinkDB
All DBs
Position
2:28178952..28205075
Genome browser
AA seq
839 aa
AA seq
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MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA
SVRPVLEIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TTLCQDRVAHILLAVGPDLYLLDHATCSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERLMMVVGDAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLTQAVQQCIEAAGHEHRPDMQKSLLRAASFGKCFLDRFPPDSFVH
MCQDLRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIQASYAPGERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGQFLDLSLHDTVTTLILSGHNKRAEQLARDFR
IPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNEAELSLVLSHCTGATDGATADKIQRARAQAQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacaccgcgaactggaacccgctcggggactctgccttttaccggaaatat
gaactgtacagcatggactgggacctgaaggaggaactcagggactgcttggtagctgct
gcaccctatgggggccccatagcactgctgaggaacccctggaggaaggagaaagctgcc
agtgtgcgaccagtgcttgagatctactctgcttctggtatgcctctggccagcctcctg
tggaagagtggacctgtggtgtccctgggctggtcggctgaggaggagctgctttgtgtg
caggaagacggtgcagtgctggtttatgggcttcatggtgacttccgaagacacttcagc
atgggcaatgaggtgctccagaaccgggttctagatgcccggatctttcacactgaattt
ggttctggagtggctatcctcacgggggcccatcgttttaccctcagtgccaatgtgggc
gatctcaaactgcgtcggatgccagaggtgccaggtctgcagagtgcaccgtcatgctgg
accactctgtgccaggaccgagtagcacacattctcctggccgtggggcctgatctttac
ctcctggaccatgcaacctgctctgcagtgacgccccctggcctggccccaggagtgagc
agcttcctgcagatggctgtctcctttacgtaccgacacctggcgctcttcacagacaca
ggctatatctggatggggacagcatcactcaaggagaagctgtgtgaattcaactgcaac
atccgggcacccccgaagcagatggtctggtgcagtcgtcctcgcagcaaggagagggct
gttgtggtggcctgggagaggctgatgatggtggtgggcgatgcccctgagagcatccag
ttcgtgcttgatgaggattcctacctggtgcctgagcttgatggggtccgcatcttctcc
cgcagcacccatgagttcctacatgaggttccagtggccagcgaggagatcttcaaaatt
gcctcgatggcccctggagcgctactgttggaggcccagaaggagtatgagaaagaaagc
cagaaggcagatgagtacctgcgagagatccaggagctggggcagctgactcaggctgtg
cagcagtgcattgaggctgcaggacatgaacaccggccagacatgcagaagagcctgctc
agggcggcctcgtttggaaagtgtttcctcgacagatttccacccgatagcttcgtgcac
atgtgtcaggacctgcgtgtgctcaatgctgtccgggactaccacattgggattcccctc
acctatagccaatataagcagctcaccatccaggtgctgctggacaggcttgtattgcgg
aggctttatcccctggccatccagatatgtgagtacctgcgccttccggaagtgcagggc
gtcagcaggatcctggcccactgggcctgctacaaggtgcagcagaaagatgtgtcagat
gaggatgttgcacgggccattaatcagaagctgggggacacacctggtgtctcttactct
gacattgctgcgcgggcctacggctgtggccgcacagagctggccatcaagctgctggaa
tatgagccacgctcgggggagcaagtgccccttctcctaaagatgaagagaagcaaacta
gcattgagcaaggccattgagagtggggacactgaccttgtgttcacagtgttgctgcac
ctgaagaatgagctgaaccgaggagactttttcatgaccctccggaaccagcccatggcc
ctgagtttgtaccgacagttctgtaagcatcaggagctagagacgctgaaggacctttac
aatcaagatgacaatcaccaggagctgggcagcttccacatccaagccagctatgcccca
ggagagcgtattgagggacgtgtagcagctctgcagacggcagctgatgccttctacaag
gccaagaatgagtttgcagccaaggctacagaggatcaaatgcggctcttacggctgcag
cggcgcctagaagatgagctggggggccagtttctagacctgtctctacatgacacagtc
accaccctcatcctgagtggccataacaaacgtgcagagcagctggcccgtgacttccgc
attcctgacaagaggctttggtggctaaagctgactgctctggcagatttggaagactgg
gaggaactggaaaaattttctaagagcaagaaatcacccattggttacctgccctttgtg
gaaatctgcatgaaacaacacaacaaatatgaggccaagaagtatgcttcccgtgtgggt
cctgagcaaaaggtcaaggctttgcttcttgttggggatgtggctcaggctgcagatgtg
gccattgagcaccggaatgaggcggagctgagccttgtattgtcccactgcactggagcc
acagatggagccacagctgacaagattcaacgagctagagcacaagcccagaagaagtga
DBGET
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