Sciurus carolinensis (gray squirrel): 124984871
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Entry
124984871 CDS
T08117
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124984871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124984871
Enzymes [BR:
ncar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124984871
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124984871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
124984871
NCBI-ProteinID:
XP_047408923
EnsemblRapid:
ENSSCRG00010015268
LinkDB
All DBs
Position
5:4331737..4339033
Genome browser
AA seq
911 aa
AA seq
DB search
MAASQTPQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGTRG
EAGDFAMIAYFVLKPRCLQKGSLTIQQVNELLDSVASNNSTKRKDLVKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGFSQQTIFSVFHNDATELHNVTTDLEKVCQQLHDPSVGLTDISI
TLFSAFKPMLAAVADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTD
QFGASPQEGSLTPFIHDAFQPDVQTCILDGEMMAYNPSTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGREILRKRYEILRSTFIPVPGRVEIVQKAQAHTKNEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGLRGGMM
SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKTFHRKAPPSSILC
GTEKPEVYIEPGNSVIVQVKAAEIVPSDMYRTGCTLRFPRIERIRDDKEWHECMTLEDLE
QLRGKAAGKLASKHLYPGEEDEPKEKRRRAAPKVKKVIGIIEHLKAPNLSNVSKVSNIFE
DVEFCVMSGTDSHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENVRVKNIISSDKHDV
VKPAWLLECFQTKSCVPWQPRFMIHMCPSTKQHFAREYDRYGDSYFVDTDLIQLKEVFSG
IKNSNAHTPEEMASVIADLECRYSWDRSPLSMFRHHTIYVDVYTVINDSSTRIQGARLAI
RALELRFHGAKVVPLLAEGVSHVLIGEDHSRVADFKAFRRTLKRKFKILQERWVTDSIEK
CELQEENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcacaaactccacagactgttgcatctcacgttccctttgcagatttatgt
tcaactttagagcgaatacagaagagtaaaggacgtgcagaaaaaatcagacacttcaag
gaatttttagattcttggagaaaatttcatgatgcccttcataagaaccaaaaagatgtt
acagactctttttatccggcaatgagacttattcttcctcagctggaaagagagagaatg
gcttatggaatcaaagaaactatgctggctaagctttatatcgaattgcttaatttgcca
agagaagggaaagatgcccttaagctcctcaattacaggacccccactgggactcggggg
gaggccggggactttgcgatgattgcgtactttgtgttgaagccccggtgtttgcagaaa
ggaagtttaaccatacagcaagtaaatgaacttttagattcagttgccagcaataattct
accaaaagaaaagacttagtgaaaaagagtcttcttcagcttataactcagagttcagca
ctggaacaaaagtggctcatacgaatgattgtaaaggacttaaaacttggttttagtcag
caaactatattttctgtttttcataatgatgctactgagttgcataatgtcactacagat
cttgaaaaggtctgtcagcagctgcatgatccctctgtaggactcactgatatttctatc
actttgttttctgcctttaaaccaatgctagctgcagtagcagatattgagcgcattgag
aaagacatgaagcaccagagtttctacatcgaaaccaagcttgatggtgagcggatgcag
atgcacaaagatggggatgtttacaaatacttttccagaaatggctataactacactgat
cagtttggcgcctctccgcaggagggctctctcaccccattcattcatgatgcattccag
cccgatgtgcaaacctgtatccttgatggagagatgatggcctacaatcccagcacacag
acctttatgcaaaagggcaataagtttgatattaaaagaatggtggaagattctgatctg
cagacttgttactgtgtttttgatgtattgatggttaataataaaaagctaggtcgtgag
atcctgagaaagaggtatgagattctcagaagtacttttataccagtaccaggtagggtg
gaaatagtgcagaaagcacaagctcataccaagaacgaagtgatcgatgcactgaatgaa
gcaatagataaaagagaagagggaatcatgataaaacatcccttgtccatttacaagcca
gacaaaagaggtgaaggatggttaaaaattaagccagaatatgtcagtggactaatggat
gaattggacatcttaattgtgggaggctattggggtaaaggtttgcggggtgggatgatg
tctcattttttgtgtgcagtagcggagaaaccccctcctggtgagaaaccatctgtgttt
cacactctgtgtcgtgttggctcaggatacaccatgaaagaactgtacgatctaggtttg
aaattggccaagtactggaagacttttcatagaaaagcaccaccaagcagcattttatgt
ggaacagagaagccagaagtgtacattgagcctggcaattctgtcatcgttcaggttaag
gccgcagagattgtccccagtgatatgtacagaactggctgtacgttgcgatttccacgg
atcgagaggataagagatgacaaggagtggcatgagtgcatgactctggaggacctggaa
cagctgcgggggaaagcagctggaaagctcgcctcgaaacacctctatccaggagaggag
gatgaaccaaaagagaaaaggcgaagagctgccccaaaggtgaagaaggtgatcggaatt
attgaacacttaaaggcacctaacctttctaacgtaagcaaagtttccaatatatttgaa
gatgtggagttttgtgttatgagcggaacggacagccatccgaagcctgacctggagaac
agaattgcagagttgggtggttacattgtacagaatccaggcccagacacatactgtgta
attgcaggttctgagaacgtcagagtgaaaaacatcatttcttctgataaacatgatgtt
gtcaagcctgcgtggctcttagaatgttttcagaccaaaagctgtgtgccctggcagcct
cgctttatgattcacatgtgcccatcaacaaaacagcattttgcccgtgaatatgatcgc
tatggtgacagttattttgttgatacagatttgatccagctgaaagaggtgttttcagga
attaaaaattctaatgcacacactcctgaagaaatggcctctgtgattgcggatttggaa
tgtcgttactcctgggaccgctctcctctgagtatgtttaggcaccacaccatttatgtg
gacgtgtacactgttattaatgactcgagtaccagaatccagggagcaagactggccatc
agagccttggagctccggttccatggggcaaaggtagttcctctcttagctgagggagta
tcccatgtgctcattggagaggatcatagtcgcgttgcagattttaaagcttttagaaga
actcttaagagaaagtttaagatccttcaagaacgttgggtaactgactcaatagaaaag
tgtgagttacaggaagaaaatcagtatttgatataa
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