KEGG   Sciurus carolinensis (gray squirrel): 124984871
Entry
124984871         CDS       T08117                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    124984871
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124984871
Enzymes [BR:ncar01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     124984871
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     124984871
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme ATG17_like
Other DBs
NCBI-GeneID: 124984871
NCBI-ProteinID: XP_047408923
EnsemblRapid: ENSSCRG00010015268
LinkDB
Position
5:4331737..4339033
AA seq 911 aa
MAASQTPQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGTRG
EAGDFAMIAYFVLKPRCLQKGSLTIQQVNELLDSVASNNSTKRKDLVKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGFSQQTIFSVFHNDATELHNVTTDLEKVCQQLHDPSVGLTDISI
TLFSAFKPMLAAVADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTD
QFGASPQEGSLTPFIHDAFQPDVQTCILDGEMMAYNPSTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGREILRKRYEILRSTFIPVPGRVEIVQKAQAHTKNEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGLRGGMM
SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKTFHRKAPPSSILC
GTEKPEVYIEPGNSVIVQVKAAEIVPSDMYRTGCTLRFPRIERIRDDKEWHECMTLEDLE
QLRGKAAGKLASKHLYPGEEDEPKEKRRRAAPKVKKVIGIIEHLKAPNLSNVSKVSNIFE
DVEFCVMSGTDSHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENVRVKNIISSDKHDV
VKPAWLLECFQTKSCVPWQPRFMIHMCPSTKQHFAREYDRYGDSYFVDTDLIQLKEVFSG
IKNSNAHTPEEMASVIADLECRYSWDRSPLSMFRHHTIYVDVYTVINDSSTRIQGARLAI
RALELRFHGAKVVPLLAEGVSHVLIGEDHSRVADFKAFRRTLKRKFKILQERWVTDSIEK
CELQEENQYLI
NT seq 2736 nt   +upstreamnt  +downstreamnt
atggccgcctcacaaactccacagactgttgcatctcacgttccctttgcagatttatgt
tcaactttagagcgaatacagaagagtaaaggacgtgcagaaaaaatcagacacttcaag
gaatttttagattcttggagaaaatttcatgatgcccttcataagaaccaaaaagatgtt
acagactctttttatccggcaatgagacttattcttcctcagctggaaagagagagaatg
gcttatggaatcaaagaaactatgctggctaagctttatatcgaattgcttaatttgcca
agagaagggaaagatgcccttaagctcctcaattacaggacccccactgggactcggggg
gaggccggggactttgcgatgattgcgtactttgtgttgaagccccggtgtttgcagaaa
ggaagtttaaccatacagcaagtaaatgaacttttagattcagttgccagcaataattct
accaaaagaaaagacttagtgaaaaagagtcttcttcagcttataactcagagttcagca
ctggaacaaaagtggctcatacgaatgattgtaaaggacttaaaacttggttttagtcag
caaactatattttctgtttttcataatgatgctactgagttgcataatgtcactacagat
cttgaaaaggtctgtcagcagctgcatgatccctctgtaggactcactgatatttctatc
actttgttttctgcctttaaaccaatgctagctgcagtagcagatattgagcgcattgag
aaagacatgaagcaccagagtttctacatcgaaaccaagcttgatggtgagcggatgcag
atgcacaaagatggggatgtttacaaatacttttccagaaatggctataactacactgat
cagtttggcgcctctccgcaggagggctctctcaccccattcattcatgatgcattccag
cccgatgtgcaaacctgtatccttgatggagagatgatggcctacaatcccagcacacag
acctttatgcaaaagggcaataagtttgatattaaaagaatggtggaagattctgatctg
cagacttgttactgtgtttttgatgtattgatggttaataataaaaagctaggtcgtgag
atcctgagaaagaggtatgagattctcagaagtacttttataccagtaccaggtagggtg
gaaatagtgcagaaagcacaagctcataccaagaacgaagtgatcgatgcactgaatgaa
gcaatagataaaagagaagagggaatcatgataaaacatcccttgtccatttacaagcca
gacaaaagaggtgaaggatggttaaaaattaagccagaatatgtcagtggactaatggat
gaattggacatcttaattgtgggaggctattggggtaaaggtttgcggggtgggatgatg
tctcattttttgtgtgcagtagcggagaaaccccctcctggtgagaaaccatctgtgttt
cacactctgtgtcgtgttggctcaggatacaccatgaaagaactgtacgatctaggtttg
aaattggccaagtactggaagacttttcatagaaaagcaccaccaagcagcattttatgt
ggaacagagaagccagaagtgtacattgagcctggcaattctgtcatcgttcaggttaag
gccgcagagattgtccccagtgatatgtacagaactggctgtacgttgcgatttccacgg
atcgagaggataagagatgacaaggagtggcatgagtgcatgactctggaggacctggaa
cagctgcgggggaaagcagctggaaagctcgcctcgaaacacctctatccaggagaggag
gatgaaccaaaagagaaaaggcgaagagctgccccaaaggtgaagaaggtgatcggaatt
attgaacacttaaaggcacctaacctttctaacgtaagcaaagtttccaatatatttgaa
gatgtggagttttgtgttatgagcggaacggacagccatccgaagcctgacctggagaac
agaattgcagagttgggtggttacattgtacagaatccaggcccagacacatactgtgta
attgcaggttctgagaacgtcagagtgaaaaacatcatttcttctgataaacatgatgtt
gtcaagcctgcgtggctcttagaatgttttcagaccaaaagctgtgtgccctggcagcct
cgctttatgattcacatgtgcccatcaacaaaacagcattttgcccgtgaatatgatcgc
tatggtgacagttattttgttgatacagatttgatccagctgaaagaggtgttttcagga
attaaaaattctaatgcacacactcctgaagaaatggcctctgtgattgcggatttggaa
tgtcgttactcctgggaccgctctcctctgagtatgtttaggcaccacaccatttatgtg
gacgtgtacactgttattaatgactcgagtaccagaatccagggagcaagactggccatc
agagccttggagctccggttccatggggcaaaggtagttcctctcttagctgagggagta
tcccatgtgctcattggagaggatcatagtcgcgttgcagattttaaagcttttagaaga
actcttaagagaaagtttaagatccttcaagaacgttgggtaactgactcaatagaaaag
tgtgagttacaggaagaaaatcagtatttgatataa

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