Sciurus carolinensis (gray squirrel): 124986823
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Entry
124986823 CDS
T08117
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
ncar03420
Nucleotide excision repair
ncar05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124986823
09124 Replication and repair
03420 Nucleotide excision repair
124986823
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
124986823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124986823
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124986823
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124986823
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124986823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
VWA_3
Motif
Other DBs
NCBI-GeneID:
124986823
NCBI-ProteinID:
XP_047411557
EnsemblRapid:
ENSSCRG00010012021
LinkDB
All DBs
Position
6:57540498..57564110
Genome browser
AA seq
395 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDASRTMEDQDLKPNRLTCTLKLLEYFIEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNTEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEDYKGERFCYGCQGELKDQHVYVC
PVCQNVFCVDCDVFVHDCLHCCPGCIHKIPTPSGI
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaacctgaaagaactaagcgatgggaaggtggctatgagaggacatgggaa
attcttaaagaagatgaatctggttcacttaaagctacaatagaagacattcttttcaag
gcaaagagaaaaagagtatttgagcaccatggacaagtacgacttggaatgatgcgccac
ctttatgtggtagtagatgcatcaagaacaatggaagaccaagatttaaagcctaacaga
ttgacatgcactttaaagttgttggaatacttcatagaagagtattttgatcaaaatcct
atcagtcagattggaataattgtaactaagagtaaaagagctgaaaaactgactgaactc
tcaggaaacccaaggaaacatataacatctttgaagaaagctgttgatatgacgtgtcat
ggagaaccatctctttataattctctaagcatggctatgcaaactctaaaacacatgcct
ggacatacaagtagagaagtcctaatcatctttagcagccttacaacttgtgatccatct
aatatttatgatctaatcaagaccctaaaggcagctaaaattagagtgtctgttattgga
ttatctgcagaggttcgggtttgcactgtacttgctcgtgaaactggtggcacataccat
gttattttagatgaaagccattacaaagaattgctaacacatcatgttagtcctcctcct
gccagctcaagttctgaatgctcacttattcgtatgggttttcctcagcacaccattgct
tctttgtctgatcaagatgcaaaaccctctttcagcatggcgcatttggataataacact
gagccagggcttacattaggaggctatttttgcccacagtgtcgtgcaaagtactgtgaa
cttcctgttgaatgtaaaatatgtggtcttactttggtgtctgctccacatttggcacgg
tcctaccatcatttatttcctttggatgcttttcaagaaattcccctagaagactataaa
ggagaaagattttgttatggatgtcagggggaattgaaagaccaacatgtctacgtttgt
cctgtgtgccaaaatgttttctgtgtagactgtgatgtttttgttcatgactgtctccac
tgttgtcctggctgtattcataagattccaactccttcaggtatttga
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