KEGG   Sciurus carolinensis (gray squirrel): 124990336
Entry
124990336         CDS       T08117                                 
Name
(RefSeq) ATP-dependent translocase ABCB1 isoform X1
  KO
K05658  ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar02010  ABC transporters
ncar04976  Bile secretion
ncar05206  MicroRNAs in cancer
ncar05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    124990336
 09150 Organismal Systems
  09154 Digestive system
   04976 Bile secretion
    124990336
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    124990336
  09162 Cancer: specific types
   05226 Gastric cancer
    124990336
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:ncar02000]
    124990336
   04147 Exosome [BR:ncar04147]
    124990336
   04090 CD molecules [BR:ncar04090]
    124990336
Enzymes [BR:ncar01000]
 7. Translocases
  7.6  Catalysing the translocation of other compounds
   7.6.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.6.2.2  ABC-type xenobiotic transporter
     124990336
Transporters [BR:ncar02000]
 ABC transporters, eukaryotic type
  ABCB (MDR/TAP) subfamily
   ABCB1, 4, 5 subgroups
    124990336
Exosome [BR:ncar04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   124990336
CD molecules [BR:ncar04090]
 Proteins
  124990336
SSDB
Motif
Pfam: ABC_membrane ABC_tran SMC_N ABC_ATPase AAA_16 AAA_22 Zeta_toxin RsgA_GTPase Rad17 AAA AAA_5 AAA_29 AAA_7 APS_kinase G-alpha AAA_30 AAA_14 DUF815 AAA_15 PRK NTPase_1 nSTAND3 nSTAND1
Other DBs
NCBI-GeneID: 124990336
NCBI-ProteinID: XP_047416223
EnsemblRapid: ENSSCRG00010009139
LinkDB
Position
8:54051966..54231331
AA seq 1275 aa
MDLEGDLNGRAGKNSLKLGKKSKKKEEKKPTVSMFAMFRYSNWLDKLYMVLGTLAAIIHG
AALPLMMLVFGEMTDSFANLGSLIPANITTNQSEADFKLNISLEEEMTTYAYYYSGIGAG
VLVAAYIQVSFWCMAAGRQINKIRKQFFHAIMKQEIGWFDVHDVGELNTRLTDDVSKINE
GIGDKIGMFFQSMATFLAGFVIGFIRGWKLTLVILTISPVLGLSAAIWAKILSSFTDKEL
LAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRIGIKKAITANISIGAAFL
LIYASYALAFWYGTSLVLSKEYTIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYE
VFKIIDNKPSIDSFSMNGHKPDNIKGNLEFRNVHFTYPSRKEVKILKGLNLKVQSGQTVA
LVGNSGCGKSTTVQLLQRLYDPTEGVISIDGQDIRTINVRYLREIIGVVSQEPVLFATTI
AENIRYGRENVTMEEIEKAVKEANAYDFIMKLPLKFDTLVGERGAQLSGGQKQRIAIARA
LVRNPKILLLDEATSALDTESEAVVQVALDKAREGRTTIVIAHRLSTVRNADVIAGFDDG
VIVEKGNHDELMKEKGVYFKLVTMQTGGNEIELENEVCESKTDIDAFDMSSKDSGSSLIR
RRSTRMSVHGPQGQDRKLSTKETLDENVPPVSFWRILRLNLTEWPYFVVGVFCAIINGGL
QPAFAVIFSRIIGVFVRNDDPETQRQNSNIFSLLFLILGIISFITFFLQGFTFGKAGEIL
TKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLG
TGIIISLIYGWQLTLLLLAIVPIIAIAGVIEMKMLSGQALKDKKELEGSGKIATEAIENF
RTVVSLTREQKFENMYAQSLQIPYRNSLRKAHIFGITFSFTQAMMYFSYAACFRFGAFLV
EKGYMDFENVLLVFSAIVFGAMAVGQVSSFAPDYSKAKVSASHIIMIIEKIPVIDSYSVE
GLKPNMLEGNVTFNEVMFNYPMRPNIPVLQGLSLQVKKGQTLALVGSSGCGKSTVVQLLE
RFYDPLAGTVLVDGKDIRQLNVQWLRAHLGIVSQEPILFDCSIGENIAYGDNSRVVSQEE
IMRAAKEANIHHFIESLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS
ALDTESEKVVQEALDKARKGRTCIVIAHRLSTIQNADVIVVFQNGKVKEHGTHQQLLAQK
GIYFSMVSVQAGAKR
NT seq 3828 nt   +upstreamnt  +downstreamnt
atggatcttgaaggggacctcaatggaagagcagggaagaactccttgaagctgggcaaa
aaaagtaaaaagaaagaggaaaagaaaccaactgtcagcatgtttgcaatgtttcgttat
tcaaattggcttgataagttgtacatggtgctgggaactttggccgctattatccatgga
gctgcccttcccctcatgatgctggtgtttggagaaatgacggatagctttgcaaattta
ggaagcttgatcccagcaaacattactactaatcaaagtgaagctgactttaaactgaac
atcagtctggaggaagaaatgaccacgtatgcctattattatagtggaattggtgctggt
gtgcttgttgctgcttatattcaggtttcattttggtgcatggcagctggaagacaaata
aacaaaattagaaaacagttttttcatgcgataatgaagcaggagataggctggtttgac
gtgcatgatgttggggagcttaacacccggctcacagatgatgtctccaaaattaacgaa
ggaatcggtgacaaaattggaatgttctttcagtcaatggcaacatttctcgctggtttt
gtaataggatttatacgtggttggaagctaacccttgtgattttgaccatcagccctgtt
ctcggactatcagctgctatctgggcaaagatattatcatcatttactgataaagaactc
ttggcatatgcaaaggctggagcagtagctgaagaagtcttagcagccattagaactgtg
attgcatttggaggacaaaagaaagaacttgaaaggtacaataaaaatttagaagaagct
aaaagaattggaataaagaaagctatcacagccaacatttctattggtgctgcttttctg
ctgatctatgcatcatatgcactggcgttctggtatgggacctccttggtcctttcaaag
gagtatactattggacaagtactcactgtcttcttttctgtgttaattggggctttcagt
gttggacaggcatctcccagcattgaagcatttgcaaatgcaagaggagctgcttatgaa
gtctttaagataattgataataagccaagcattgacagcttctcaatgaatgggcacaaa
ccagacaatattaagggaaatttggaattcagaaatgttcacttcacttatccatctcga
aaagaagttaagatcttgaagggccttaacctgaaggtgcagagtgggcagacggtagcc
ctggttgggaacagtggctgtgggaaaagcacaacagtccagctactgcagagactctat
gaccccaccgagggcgtgatcagtattgacgggcaggacattaggaccataaatgtaagg
tatctgcgagaaatcatcggtgtggtgagtcaggaacctgtgttgtttgccaccacaata
gcagaaaacattcgctatggtcgtgaaaatgtcaccatggaggagattgagaaagccgtc
aaggaagccaatgcctatgattttatcatgaaactgcctcttaaatttgacaccctggtt
ggagagaggggcgcccagctgagtgggggccagaaacagagaatcgccattgcacgtgcc
ctggtgcgcaaccccaagatcctcctgctggatgaggccacgtcagccttggacacagaa
agcgaagcagtggtccaggtggctctggataaggccagagaaggccggaccaccattgtt
atagctcaccgtttgtccacagttcgtaatgctgatgtcatcgctggttttgatgatgga
gtcattgtggagaaaggaaatcatgatgaactcatgaaagagaaaggtgtttacttcaaa
cttgtcacaatgcagacaggaggaaatgaaattgaattagaaaatgaagtttgtgaatcc
aaaactgacattgatgccttcgatatgtcttcaaaagattcaggatccagtctaataaga
agaagatcaactcgcatgagtgtccatggaccacaaggacaagacagaaagcttagtaca
aaagagaccttggatgaaaatgtacctccagtttccttttggaggattctaaggctgaat
ttaactgaatggccttattttgtggttggtgtattttgtgctattataaatggaggcttg
caaccagcatttgcagtaatattttcaaggattataggggtatttgtaagaaatgatgat
cctgaaacacaacgacagaacagtaacatattttcgctgttatttctaatcctaggaatt
atttcttttattacatttttccttcagggcttcacatttggcaaagctggagagatcctc
accaagaggctccgatacatggttttcaggtccatgctgagacaggatgtgagctggttt
gatgatcctaaaaataccactggagccttgactaccaggcttgccaatgatgctgctcaa
gttaaaggggctatcggctccaggcttgccgtaattacccagaatatagcaaatcttggg
acaggaattatcatctccttaatctatggctggcaactaacacttctactcttagcaatt
gtacccatcattgcaatagcaggagttattgaaatgaaaatgttgtctggacaagcacta
aaagataagaaagaactagaaggttctggaaagatcgctacagaagcaatagaaaacttc
cgcactgttgtttctttgactcgggagcagaagtttgagaatatgtatgcacagagtttg
cagataccatacagaaactctttgaggaaagcacacatctttggaatcacattttccttc
acccaggcaatgatgtatttttcctacgctgcttgtttccggtttggtgccttcttggtg
gaaaagggctacatggattttgaaaatgttctgttggtattttcagctattgtctttggt
gccatggctgtggggcaggtcagttcatttgctcccgactattccaaagccaaagtgtca
gcatcccatatcatcatgatcattgagaaaattccagtgattgacagctatagtgtggaa
ggcctgaagccaaatatgttggaaggaaatgtgacatttaatgaagtcatgttcaactat
cccatgcgaccaaacatcccagttctccaggggctgagcctccaggtgaagaagggccag
acgctggccctggtgggcagcagtggctgtgggaagagcacggtggtccaactcctcgag
cggttctacgaccccctggccgggacggtgctggtggacggtaaagatataaggcaactg
aatgtccagtggcttcgagcacacctgggcattgtgtcccaggagcccatcctgtttgac
tgcagtatcggagagaacattgcttacggggacaacagccgggttgtgtcacaggaagag
atcatgagggcagccaaggaggccaacatacaccacttcattgagtcactgcctgataaa
tacaacaccagagtcggagacaaaggaactcagctctctggcgggcagaagcagcgcatt
gccatagctcgcgccctcgtgagacagcctcacattttgcttttggatgaagccacgtca
gctctggacacagaaagcgaaaaggttgtccaggaagccctggacaaagccagaaaaggt
cgcacgtgcatcgtgatcgctcaccgcctgtccaccatccagaacgcagatgtgatcgtg
gtgtttcagaatggcaaggtcaaggagcatggcacgcatcaacagctgctggcacagaaa
ggcatctatttttcaatggtcagtgtccaggctggagcaaagcgctag

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