Sciurus carolinensis (gray squirrel): 124990501
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Entry
124990501 CDS
T08117
Name
(RefSeq) ATP-dependent RNA helicase DDX54 isoform X1
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncar03009
]
124990501
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124990501
Ribosome biogenesis [BR:
ncar03009
]
Eukaryotic type
Pre-60S particles
Helicases
124990501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
124990501
NCBI-ProteinID:
XP_047416545
EnsemblRapid:
ENSSCRG00010011807
LinkDB
All DBs
Position
8:143953710..143970517
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AA seq
878 aa
AA seq
DB search
MAAGKRPAAGPRSPAAMAQWRKKKGLRKRRGAASQARDSDSEDGDFEIQAEDDARAGKLG
PGRPLPTFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGFSYPVFRGIMKKGYKVPT
PIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTRSAQSGARALVLSPTRELAL
QTMKFTKELGKFTGLKTALVLGGDKMEDQFAALHESPDIIIATPGRLVHVAVEMGLKLQS
VEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIR
LDVDAKLNEQLKTSFLLVREDAKAAVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTA
QRVSCTHIYSALDQTARKINLAKFTHGKCLALIVTDLAARGLDIPLLDNVINYSFPAKGK
LFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSLTLARPHEEPSGAGTDGVLG
RVPQSVVDDEDCGLRSTLEASLELRSLGRVADNAQQQYVRSRPAPSPESIKRAKELDVAG
LGLHPLFSSRFEEGELRRLRLVDGIRSYRARSTIFEINASSRDLSSQVMRAKRQKDRKAI
ASFQQGRKEQQERQKTLAGPSPRCPAPQEEQPGKEEDEGENVEDVFTEVTGQKRQRPPPH
RGAKRRREEAQQRDQEFYVPYRPKDFDSERGLSVGGVGGAFEQQVAGAVLDLMGDEAQNL
TRGQQQLKWDRKKKRFVGQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQKQKIDDRDSE
EEGTFDRRGPARRGGKRGRGPGASQPRAPGAPAGRVRSELKTKQQILKQRRRAQKMRFLQ
RGGLKQLSARNRRRVRELQQGAFGRGAPSRKGKMRKRM
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcaagcgcccggcggccggacctcggtcgccagctgccatggcccagtgg
aggaagaagaaggggctccggaagcgccggggcgcggcctcccaggcccgcgacagcgac
tcggaggacggcgactttgagattcaggcggaggatgacgcccgggcggggaagctggga
cctggcagacccctgcccacctttcccacctcagagtgcacctcagacgtggaaccagac
acccgggagatggtgcgagcccagaacaagaagaagaagaagtctggaggtttccagtcc
atgggcttcagctacccggtgttcagaggcatcatgaagaagggttacaaggtgcccacg
cccatccagaggaagaccatcccagtgatcctggacggcaaggacgtggtggccatggcc
cggacgggcagcggcaagacggcctgcttcctgcttcccatgttcgagcggctcaagaca
cgcagcgcccagagcggggctcgcgccctggtcctctcgcccacccgggagctggccctg
cagaccatgaagttcacgaaggagctgggcaagttcactggcctcaagactgccctggtc
ctgggcggggacaaaatggaagaccagtttgcagccctgcatgagagtcctgacataatc
atcgccacccccgggcggttggtgcacgtggctgtggagatgggcctgaagctgcagagc
gtggagtacgtggtcttcgacgaagcagacaggctctttgaaatggggtttgccgagcag
ctgcaagagatcatcggccgcctccccgggggccaccagacggtgctgttctccgccacg
ctgcctaaactgctggtggagtttgcccgggcaggcctcacggagcccgtgctcatccgg
ctggacgtggacgccaagctgaacgagcagctcaagacctccttcctcctggtgcgcgag
gacgccaaggccgctgtgctgctgcacctgctgcgcaacgtcgtgcggccccaggaccag
acagtggtgttcgtggccacaaagcaccacgccgaatacctcacggagctgctgacggcc
cagcgggtcagctgcacccacatctacagcgccctggaccagacagcccgcaagatcaac
ctggccaagttcacacacggcaagtgcttggccctcatcgtgaccgacctggctgcccgg
ggcctggacatcccgctgctggacaatgtcatcaactacagcttccctgccaagggcaag
ctcttcctgcatcgcgtgggccgcgtggcccgggccggccgaagtggcacagcctactcc
ttggtggccccagacgaggttccctacctgctggacctgcacctgttcctgggccgctcc
ctcaccctggcgcgaccccacgaggaaccctcaggtgctggcacggacggcgtgctgggc
cgggtgccgcagagcgtggtggacgacgaggactgcggcctgaggagcaccctggaggcg
tcgctggagctgcggagcctgggccgcgtggcggacaatgcccagcagcagtacgtgcgc
tcgcggccagcgccctcgcccgagtccatcaagagggccaaggagctggacgtggcgggg
ctgggcctgcaccccctcttcagctcgcgctttgaggagggggagctgcggcggctgagg
ctggtggacggcatccggagctaccgcgcacgctcgaccatctttgagatcaatgcctcc
agccgggacctgagcagccaggtgatgcgtgccaagcggcaaaaggaccgcaaagccatc
gccagcttccagcagggacggaaggagcaacaggagcggcagaaaactctggccggcccc
tccccgcgctgcccagcacctcaggaggagcagcctgggaaggaagaggacgagggagag
aatgtggaggatgtcttcacagaggtcacgggccagaagcggcagcggccaccacctcac
agaggagccaagaggcggagggaggaggcccagcagcgggaccaggagttctacgtcccc
taccggcccaaggacttcgacagcgagcgtggcctgagcgtcggtggggtcggcggagcc
ttcgagcagcaggtggctggggcggtcctggacctgatgggggacgaagcgcagaacctg
acccgaggccagcagcagctcaagtgggaccggaagaagaaacggtttgtcggacagtcg
ggacaggaagacaaaaagaagatcaagaccgagagcggccgctatatcagcagctcctac
aagcgggacctctaccagaagtggaaacagaaacagaaaattgatgatcgggactcagag
gaggaagggacatttgaccggcgaggcccagcacgaagaggtgggaagcgagggcgtggc
ccaggtgcctcccagccccgggcccccggagcccccgcaggccgcgtgcgctcagagctc
aagaccaagcagcagatcctgaagcagagacgccgggcccagaagatgcgcttcctgcag
cgcgggggcctcaagcagctctctgcgcgcaaccgccgccgggtccgggagctgcagcag
ggcgcctttggccggggcgccccctccaggaagggcaagatgaggaagaggatgtaa
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