Sciurus carolinensis (gray squirrel): 124995336
Help
Entry
124995336 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 47-like
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ncar01002
]
124995336
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124995336
Enzymes [BR:
ncar01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
124995336
Peptidases and inhibitors [BR:
ncar01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
124995336
Ubiquitin system [BR:
ncar04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
124995336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
124995336
NCBI-ProteinID:
XP_047423616
LinkDB
All DBs
Position
11:complement(64789375..64886479)
Genome browser
AA seq
1373 aa
AA seq
DB search
MVPGEENQLVPKEDVFWRCRQNIFDEMKKKFLQIENAAEEPRVLCIIQDTTNSKTVNERI
TLNLPASTPVRKLFEDVANKVGYINGTFDLVWGNGVNTADMAPLDHTSDKSLLDANFEAG
KKNFLHLTDKDGEQPQILLEDSSNMDDSVHDRFIGPLPREGSVGSTSDYVSQSYSYSSIL
NKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLF
VLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINEL
YQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPN
QYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSTF
IDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSNDDGVDEGICLESNSGTEKISKPGL
EKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTHGGSS
GSRGYYSSAFASSTNAYMLIYRLKDPTRNAKFLEVDEYPEHIKNLVQRERELEEQEKRQR
EIERNTCKIKLFCSHPIKQVMMENKLEVHKDKTLKEAVEMAYKMMDLEEVIPLDCCRLVK
YDEFHDYLERSXEGEEDTPMGLFLGGVKSTXLFDLLLETRKPDQXFQSYKPGVMVKVHVV
DLKAETVAAPITVRAYXSAVTEFKPLISKAIHLPAETMRIVLERCYNDLRLLSVPSKTLK
AEGFFRSNKVFVESSETLDYQMAFTDSHLWKLLDRHANTIRLFVLLPEQSPGSYSKRTAY
QKAGGDSGNVDEDCERVTGPVGSLKSVEAILEESTEKLKSLSLQQQQDGDNGDSSKSTET
SDFENIESPLNERDSSASVDNRELEQHIQTSDPENFQSEERSDSDVNNDRSTSSVDSDIL
SSSHSSDTLCNADNAQIPLANGLDSHSITSSRRTKANEGKKETWDTAEEDSGTDSEYDES
GKSRGELQYMYFKADPYAADEGSGEGHKWLMVHVDKRITLAAFKQHLEPFVGVLSSHFKV
FRVYASNQEFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLVNEQEPCKFLL
DAVFAKGMTVRQSKEELIPQLREQCGLELSIDRFRLRKKTWKNPGTVFLDYHIYEEDINI
SSNWEVFLEVLDGVEKMKSMSQLAVLSRRWRPSEMKLDPFQEVVLESSSVDELREKLSEI
SGIPLEDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSALNVWPLYICDDGAVIFIRDKTE
EVMELTDEQRNELMKKKAXSTPKTGHRVTYSPRKEKALKIYLDGAPNKDLTQD
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccggcgaggagaaccaactggtcccgaaagaggatgtattttggagatgcaga
caaaatatctttgatgaaatgaagaagaaatttttacagatagaaaatgctgctgaagaa
cctagagtcttatgtataatacaagatactactaattcaaagacagtgaatgaacggatc
actttaaatttaccagcatctactccagtcagaaaactctttgaagatgtggccaacaaa
gtaggctacataaatggaacctttgatttggtgtggggaaatggagtcaatactgctgat
atggctccactagatcacaccagtgacaaatctcttcttgatgctaattttgaggcagga
aagaagaactttctgcatttgacagataaagatggtgaacagcctcaaatactactggag
gattccagtaacatggatgacagtgttcatgacaggtttataggtccacttccaagagaa
ggttctgttggctccactagtgattatgtcagtcaaagctactcctattcatctattttg
aataaatcagaaactggatatgtgggattagtaaaccaggcaatgacttgctatttgaat
agccttttgcaaacactttttatgactcctgaatttaggaatgcattatataagtgggaa
tttgaagaatctgaagaagatccagtgacaagtatcccataccaacttcaaagacttttt
gttttgttacaaaccagcaaaaaaagagcaattgaaaccacagatgtcacgaggagcttt
ggatgggatagtagtgaggcttggcagcagcatgatgtacaagaactatgccgagtcatg
tttgatgctttggaacagaaatggaagcaaacagagcaggctgatcttataaatgaactg
tatcaaggcaagctgaaggactacgtgagatgtctcgaatgtggttatgagggctggaga
atcgacacatatcttgatattccattggtcatccgaccttacgggtccagccaagcattt
gctagtgtggaagaagcattacatgcatttattcaaccagaaatcctggatggcccaaat
cagtatttttgcgaacgttgtaagaagaaatgtgatgctcgaaagggtcttcggtttttg
catttcccttatcttttgaccttacagttgaaaagatttgattttgattatacaaccatg
cataggattaaattaaatgatcgaatgacatttcctgaggagctagatatgagtacattt
attgatgttgaagatgagaaatctcctcagaccgaaagttgcactgatagtggagcagaa
aatgaaggtagttgtcatagtgatcagatgagcaatgatttctccaatgatgatggtgtt
gatgaaggaatctgccttgagagcaatagtggaactgaaaagatttcaaaacctggactt
gaaaagaattccttgatctatgagctcttctctgttatggttcattcggggagtgctgct
ggtggtcattattatgcttgtataaagtcattcagtgatgagcagtggtacagcttcaat
gatcaacatgttagccggataacacaagaagacattaagaaaacacatggtggatcttca
ggaagcagaggatattattccagtgcttttgcaagttccacaaatgcatatatgctgatt
tatagactgaaggatccaacaagaaatgcaaaatttctagaagtggatgaatacccagaa
catattaaaaacttggtgcagagagagagagaattggaagaacaagagaagaggcaacga
gaaattgaacgtaatacgtgcaagataaaattattttgttcacatcctataaaacaagta
atgatggaaaataaattggaggttcataaggacaagacattaaaggaagcagtagaaatg
gcttataagatgatggatttagaagaggtaatacccctggattgctgtcgccttgtgaaa
tatgatgagtttcatgattatctagaacgatcantagaaggagaagaagatacaccaatg
ggactctttctaggtggagtcaagtcaacgtaattgtttgacctacttttggagacaaga
aagcctgatcaangtttccagtcttacaaacctggagtgatggtgaaagttcatgttgtt
gatctaaaggcagaaactgtagctgctcccataactgttcgtgcttactaatcagcagtt
acagagttcaaaccgctaatttcaaaggccatccatttacctgctgagaccatgagaata
gtactggaacgctgctataatgatttgcgtcttctcagtgtgcccagtaaaaccctgaaa
gctgaaggtttttttagaagtaacaaggtgttcgttgaaagttccgagactttggattac
caaatggcctttacggactctcatttatggaaactcctggatcgacatgcaaatacaatt
aggttatttgttttgctacctgaacaatccccaggatcttattccaaaaggacagcatac
cagaaagctggaggcgattctggtaatgtggatgaagattgtgaaagagtcacaggacct
gtagggagcctaaagtctgtggaagctattctggaagaaagcactgaaaaactcaaaagc
ttatcgctgcagcaacagcaggatggagataacggggacagcagtaaaagtactgagaca
agtgactttgaaaacatcgaatcacctctaaatgagagggactcttcagcatcagtggat
aatagagaacttgaacagcacatccagacttctgacccagaaaattttcagtccgaagaa
cgatcggactcagatgtgaataatgacaggagtacaagttcagtggacagtgatattctt
agctccagtcatagcagtgatactttgtgcaatgcagataatgctcagatccctttggct
aatggacttgactctcacagtatcacaagtagcagaagaactaaagcaaatgaagggaaa
aaagagacttgggatacagcagaagaagactctggaactgatagtgaatatgatgagagt
ggcaagagtaggggagaattgcagtacatgtatttcaaagcagatccctatgctgcagac
gaaggctctggggaaggacataaatggttgatggttcatgttgataaaagaattactctg
gcagctttcaaacaacatttagagccctttgttggagttttgtcatctcacttcaaggtc
tttcgagtatatgccagcaatcaagaatttgagagcgtccgactgaatgagacactttca
tcattttcagatgacaataagattacaataagactggggagagcacttaaaaaaggagaa
tacagagttaaagtgtaccagcttttagtcaacgaacaagagccatgcaagtttctgcta
gatgctgtgtttgctaaaggaatgactgtgcggcaatcaaaagaggaattaattcctcaa
ctcagggagcagtgtggtttagaactcagtattgacaggtttcgtctaaggaaaaaaaca
tggaagaatcctggcactgtctttttggattatcatatttatgaagaagatattaatatt
tccagcaactgggaagttttccttgaagttcttgatggggtagagaagatgaagtccatg
tcgcagcttgctgttctgtcacgacggtggaggccttcagagatgaagttggatcccttc
caggaggttgtgttggagagcagtagtgttgatgagttgcgagagaagcttagtgaaatc
agtggaattcctttggaagatattgaatttgccaagggcagaggaacttttccctgtgat
atttctgtccttgatattcatcaagatttggactggaatcctaaagtttctgccctgaat
gtctggcctctttatatctgtgacgatggtgcagtcatatttataagggataaaacagaa
gaagtaatggagttgacagatgagcaaagaaatgaactgatgaaaaagaaagcanngtcg
actccgaagactggacatcgtgtaacatactcacctcgtaaagaaaaagcactaaaaatt
tatctggatggagcgccaaataaagatctgactcaagactga
DBGET
integrated database retrieval system
