KEGG   Notothenia coriiceps (black rockcod): 104942172
Entry
104942172         CDS       T04920                                 
Name
(RefSeq) general transcription factor IIH subunit 2-like
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03022  Basal transcription factors
ncc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104942172
  09124 Replication and repair
   03420 Nucleotide excision repair
    104942172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncc03021]
    104942172
   03400 DNA repair and recombination proteins [BR:ncc03400]
    104942172
Transcription machinery [BR:ncc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     104942172
DNA repair and recombination proteins [BR:ncc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     104942172
SSDB
Motif
Pfam: Ssl1 VWA_2 VWA DZR DZR_2 FYVE
Other DBs
NCBI-GeneID: 104942172
NCBI-ProteinID: XP_010765673
UniProt: A0A6I9MQY2
LinkDB
Position
Unknown
AA seq 361 aa
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILFQSKRKRVIESHGQVRLGMMRH
LHVVIDCSRSMDDHDLKPNRLTSTLKLMESFVDEYFDQNPISQLGIITTKNKRAEKLTDL
AGNPKNHIVALKKAVATLCVGEPSLYNSLNLAIQTLKHMPGHTSREILIVLSSLTTCDPA
NICELIKTLKALKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPP
ASSSSECSLIRMGFPPHIIASLTNQDAKPSFSMSHLDSSCGAGLSLGGYFCPQCQAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLAAFTESPVDGLQDDRVCQACQGELKDKTVSTI
A
NT seq 1086 nt   +upstreamnt  +downstreamnt
atggatgaagaaccagagagagccaagcgctgggaagggggctatgagaggacttgggaa
gtgctgaaggaggacgaatctggatccctgaaagccacagtagaggagatcctgttccaa
tctaagaggaagagggtgatagagagccatggacaagtaaggctcggaatgatgcgtcac
ctccacgtggtaattgactgttcaagaagtatggatgaccatgacttaaaaccaaaccgc
ctcacctccactctgaagctcatggaatcttttgttgatgagtattttgaccaaaacccc
atcagtcagctgggcattatcaccacaaagaataaacgagctgagaagctgaccgacctg
gcaggaaatccaaagaatcacattgttgctctgaagaaagcagtcgccactttgtgtgta
ggagagccgtccttatacaactctctcaacctggccattcagacactcaagcacatgcct
ggacatacgagccgggagatcctcatcgtcctcagcagcctcactacatgtgacccagcc
aacatatgtgagctgattaagaccctgaaggctctcaaggtgcgggtgtctgtgataggc
ctatcagctgaggtcagggtatgcacagtcctgaccagagagacgggaggctcgtaccac
gttatcctggatgagagtcacttcaaggagctgctgatgctgcatgtcaaacctcctcca
gccagctcttcatctgaatgctctttaatacgcatgggttttcctccacacatcatcgcc
tccctcactaatcaggatgccaagccttcattcagcatgtctcacctggacagcagctgt
ggtgcgggtctgtctctgggaggatacttttgtccgcagtgccaagcaaagtacacagag
ctacctgtggagtgtaaagtctgcggtttgactctggtgtcggcaccccatcttgccaga
tccttccaccaccttttcccgctcgcagcctttacagagagtcctgtggatgggctccaa
gacgacagggtctgtcaagcttgtcaaggggagctgaaagataaaactgtaagtacaata
gcttaa

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