KEGG   Notothenia coriiceps (black rockcod): 104956669
Entry
104956669         CDS       T04920                                 
Symbol
smndc1
Name
(RefSeq) LOW QUALITY PROTEIN: survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104956669 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ncc03041]
    104956669 (smndc1)
Spliceosome [BR:ncc03041]
 Complex A
  U2 snRNP components
   U2 related factors
    104956669 (smndc1)
 Complex B
    104956669 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    104956669 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR PUA_4 SiaC Spt6_S1 AATase DUF2067
Other DBs
NCBI-GeneID: 104956669
NCBI-ProteinID: XP_010782495
UniProt: A0A6I9P4R2
LinkDB
Position
Unknown
AA seq 177 aa
MSEDLVKQLNSYKAQLQQVEVALSTDEENEDLLKLQKDLQEVIDLTTDLLTSQPAESAST
TNSSVTAPVKQRWKVGDNCLAVWNQDGQTYEAEIEEIDRENGTAAVTFAGYGNAEVIPLQ
NLKPSEDGKRNADDGKPKSKKEQIRQRIRESIRRKKAQKKVLRMKGIRQKREGTKSK
NT seq 534 nt   +upstreamnt  +downstreamnt
atgtcggaagacttggtgaaacagttgaacagctacaaagcccagctacagcaagtagaa
gttgccttatctaccgatgaagaaaatgaagacctccttaaactccagaaagacttgcag
gaagtcatcgatctgacaacagaccttcttacctcacaacccgctgagagtgcttcaact
actaatagctcagtgacagcgccagtgaagcagcgctggaaagtgggggacaactgcctg
gctgtgtggaatcaggacggacagacttatgaggctgagattgaggagatagaccgggag
aatggcaccgcagccgtgaccttcgccgggtacgggaatgctgaagtgattcctctgcag
aacctcaagccatccgaggacgggaaacgaaatgccgacgatgggaagcctaaatcaaag
aaagaacagatacggcagagaatcagagagagtataagaagaaaaaaagcccagaaaaag
gttctgaggatgaagggaattagacagaagagggagggaacaaagtcaaagtaa

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