Notothenia coriiceps (black rockcod): 104961587
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Entry
104961587 CDS
T04920
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104961587 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104961587 (lig4)
Enzymes [BR:
ncc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104961587 (lig4)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104961587 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104961587
NCBI-ProteinID:
XP_010788208
UniProt:
A0A6I9PM49
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MEGSSTSDAAAQPSVAAQVPFLHLCSTLEKIQKTKLRPEKSKTLGDFIESWRKFHSALHK
DNPKTTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKGLVKKSLLHII
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDASELYNVNTDLNKVCQQLHNPSTSL
SDVSIGLFSAFKPMLAGVANIRNVEKQMGNSPFFIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGASPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTDIFMQKGSKFDIKKLM
DDSELQTCFCVFDVLLVNDQKLGKETLKKRHETLQTVFTPVKGRIHLVPKADARTVQDVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGK
RGGMMSHFLAAVAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVILQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQLRGKASGKLASRHLYIDGNEPQKKKRKPLVKPKKVVGIIDHFKHQDLSGVTKET
DMFEDVEFCILNGTEQNPKAELEKGVARCGGVVVQNPGRDTYCVVAGVENMRVKNLVLSD
QHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFARISNEDTAAAVNISQVEQRYSWEDIPTSMFRPFEVYMDRFTDIGEPGTAIKASCLDI
RALEFRYHGGKVVQKLEEGVSHVIISEETRLLHLRNLRRCFRKKFKIVRESWLTDSIKAG
YLLNDTDYLA
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcttctacaagtgatgcagctgctcagccctctgtcgctgctcaagttcct
ttccttcatctttgctccaccttagagaaaatccagaagactaaactccgcccagagaaa
tccaagacccttggggatttcattgagtcatggaggaagtttcattctgccctccacaaa
gacaaccccaaaacaacagactctttctactcagctatgcgcctcatagtcccttccttt
gaacgagagcgcatggcttacggcatcaaagagagcatgttggctaaactttatatcgac
gtcttaggcctcccaaagaatggcccagaagccaataaacttttgaactaccgtgctccg
actacatcccaaggggaagctggagactttgccggcatggcgtactttgtgctgaagaaa
cgctgcaccagccaaggaaatctaagcatcaaagaagtaaacgactttctggattcggta
gcaatcaacaacgctagcaagcagaaaggtcttgtgaaaaagagtctgctgcacatcatc
acccagagctcggctctcgagcagaagtggctcatcagaatgattctgaaagacatgaag
ctcgggatcagcaaagaaactgttcttcaagtcttccacccggatgctagcgagctctat
aatgtcaacacggacttaaacaaagtctgccagcagctccacaacccctctacgtcttta
agcgatgtctctatcggactcttctccgcattcaagcctatgttggcgggtgtggcgaac
atccgcaatgtggagaaacagatgggaaacagcccatttttcattcaaactaaactggat
ggagagcggatacagcttcacaaagacggcgacgtgtacaagtacttcagtcgaaacgct
tttgagtacacccagcagtttggcgcatctccactggaaggctcgctgacgccttacatc
cacaacgttttcaaaagccacgtcgtaaactgcatcctcgacggggagatgatggcgtac
aacccgaccacggacatcttcatgcagaaagggagcaaattcgacatcaagaagctaatg
gacgactctgagctacagacgtgcttctgtgtgtttgacgtgctgttagtcaatgaccag
aagcttggcaaggaaacactaaagaagcgccacgagacccttcaaaccgttttcactcca
gtcaaggggaggatacatctggtaccaaaggccgatgccagaaccgtgcaggacgtggtg
aacgccctcaatgacgccattgacagcagagaagaggggatcatggtgaaggatcctttg
tccatctacaaacctgacaagcgaggagagggatggctgaaaataaagccagaatatgtg
gatggcttgatggatgagcttgacctgctgattgttggcggatactgggggaaaggaaaa
cggggcggtatgatgtcccatttcttagctgccgtcgcagaagctccaaagcctggcgag
aaaccctcagttttccactctttttgccgcatcggctctggctacaccatgaaggagttg
tacgacctcggtttaaagctagccaagcattggaaagtctaccgaaaaaacgacccgcca
gcatccatcttgtgcggaaccgagaaaccagaagtctacatcgagccctgcaactcggtc
atcctccaggtgagggcggcggaaatagtgggcagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggattgagaagatccgcgaggacaaggagtggcaccagtgcatgaca
ctcgcagagctggaccagttacgcgggaaggcctctgggaaactagcttcgcggcacctc
tacatcgatggcaacgaaccgcagaagaagaagcgcaagccactggtcaaacccaagaag
gtggtcgggatcatcgaccacttcaagcaccaggacctctccggggttaccaaggagacg
gatatgtttgaggatgtcgagttctgtatcctgaatggcactgagcagaaccccaaagcg
gagctggaaaagggcgtggccaggtgtggtggtgtcgtggttcaaaacccaggacgggac
acctactgcgtggttgccggcgtggagaacatgcgcgtgaagaacctggttttgtccgac
cagcatgacgttgtgtgggccgcctggctgctggagtgcctggaccagaaggaagtggtc
ccatggcaaccgcggcacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacagctatggcgacagctacttcgtggacacggacgagcagcagctgcgggag
gtgtttgcacgaatcagcaacgaggacacggcggcggcggtgaacatcagccaggtggag
cagcgctacagctgggaggacattcccaccagcatgttcaggccatttgaggtctacatg
gacagattcaccgacattggagaacctggaaccgccataaaagcttcctgtttggacatc
agggcgctggagtttcgctaccatggaggtaaggtggtgcagaagttggaggaaggagtc
tctcatgtcattatctcagaggaaaccagacttctgcacttaaggaatctgaggcgctgc
tttaggaagaagtttaagatcgtaagagaatcatggttgactgattcaataaaagcaggg
tatctgctgaatgacactgactacttggcttaa
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