Notothenia coriiceps (black rockcod): 104962592
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Entry
104962592 CDS
T04920
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03015
mRNA surveillance pathway
ncc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104962592 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104962592 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104962592 (cpsf6)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
104962592 (cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
104962592
NCBI-ProteinID:
XP_010789343
UniProt:
A0A6I9PPZ9
LinkDB
All DBs
Position
Unknown
AA seq
433 aa
AA seq
DB search
MADGVDHIDIYADVEEEFNQEADYPVHDQIDLYDDVISPSANNGDAPEDRDYLDTLPTQG
GSEGGKSSQPNVVYTYTGKRIALYIGNLTWVGRSSSINFLEDDSEPTHTSANLHGGMQGP
PRPPPGPLGPPGPPGPPPPGQGLPPLHPGPPNRGDRLPPPVLFPGQFGQPPMGPLPPGPP
PPGYGPPPGPPPPQQGPPPPGPFPLRPPGPLGPPMSLAPPPHMPGPPPGGPPPAPHVNPA
FFPPPGNNNNMPPNDNRGPPGPNDPYGRPPPYDRGDYGPGGREMEASRTPLSEAEFEEIM
NRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLH
GIESKSYGSASRRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDR
DREREREREYRHR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcacatcgatatctacgccgacgtagaggaggaattcaaccag
gaagccgactacccggtccacgaccagatcgacctgtatgatgatgtaatatctccatca
gccaacaatggagatgctccggaggaccgcgactatctggacacactgcctacacagggt
ggctcagagggagggaagagttcccaacccaacgtggtgtacacctacacaggcaaaagg
attgccctgtacataggaaacctaacatgggtgggtagaagcagctccatcaacttcctg
gaagatgactctgagcccacacacaccagtgcaaacctacatggtgggatgcaaggtcca
ccacgtccccctcctggtccactcggaccccctggtcctccaggacctccaccccctggc
cagggtctcccccctctccaccctggtcctccaaatcgtggtgacaggcttcctccccct
gttctctttcctggtcagtttggccagcctcccatgggccccctgcccccaggcccccca
cctccaggttacggtcctcctcctggtcccccaccacctcaacagggcccccctcccccg
ggacccttccctctgcgccccccaggcccccttgggccccccatgtctttggctccacct
ccacacatgccaggtcctccaccaggtggaccaccaccagcaccccatgtcaaccctgcc
ttcttccccccacctggcaacaacaacaacatgccccccaatgacaaccgaggccccccc
ggaccaaacgacccatacggacgcccgccaccatatgacagaggggactacggtcctgga
ggccgggaaatggaggcgtcccggaccccactgagcgaggcagagtttgaggagatcatg
aacaggaacagagccatctcctccagcgcaatttctcgagcagtgtctgacgccagtgca
gctgactatggcagtgccatagagaccttggtgacagccatcagtctgattaaacagtcc
aaagtgtcggcggacgaccgctgtaaggtcctgatcagttccctgcaggactgtctccac
ggcattgagtcaaaaagctacggttctgcctctaggcgagaacgttccagggaacgggac
catagccgctccagagaaaagagccggcgtcacaagtctcgcagccgtgataggcatgaa
gactattacagagaacgcagccgggagcgcgaccgccatcgtgagcgggacagggaccga
gaccgcgagagagagcgcgaaagggagtaccgacaccgctag
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