Natranaerofaba carboxydovora: ACONDI_02961
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Entry
ACONDI_02961 CDS
T07970
Symbol
ligd
Name
(GenBank) Bifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACONDI_02961 (ligd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncd03400
]
ACONDI_02961 (ligd)
Enzymes [BR:
ncd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACONDI_02961 (ligd)
DNA repair and recombination proteins [BR:
ncd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACONDI_02961 (ligd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UMZ75338
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All DBs
Position
3124651..3125550
Genome browser
AA seq
299 aa
AA seq
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MVEKEIIDILGRDVTLTNLDKYLWPELKVAKYHLIDYYIKIYPYIKHHLADRPLVFNRYP
DGIYGKSFYQKNIPTGAPKWVKRININSKNNEKAKEYVLLDHPSTLVWLANLACIEIHPW
LSKVESLDNPDFVVFDLDPMIDVTFQEVKKTAKVIKKILDELELRAYPKLSGSTGIQIFL
PVKPQYSYQEVREFGHKVMKVVNGLIPETTTLERKVDKRGKKIYLDYMQNVKGKTISVVY
GTRPLKNAPVSAPIKWKELDDATLRPDSFNIFNIFQRLEEYGDLFYPALTDKQKIDNLL
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
gtggtagagaaagaaattattgatatcttgggtagagatgtaactcttaccaaccttgat
aaatatctttggccagaattaaaagttgcaaagtatcacttgattgattattacataaaa
atttacccttatatcaagcatcatctagcagatcgtccactcgtttttaatagatatcct
gatggaatatacggcaaaagcttttatcaaaaaaatattccgactggtgcccccaaatgg
gtaaaaaggataaatatcaattcaaaaaataatgagaaagctaaagaatatgttttgtta
gatcatccttctactctggtatggttagctaatcttgcctgtatagaaatacatccatgg
ctttctaaggtagaaagccttgacaatccggattttgtagtatttgatctggatcctatg
atagatgttacgtttcaagaggttaaaaaaacagcaaaggtaattaaaaaaattttagac
gaacttgaattaagagcttatccaaagctatctggctcaacagggattcaaatttttttg
cctgtcaaaccacagtacagctatcaagaagtaagagaatttggacataaagtaatgaaa
gtagtaaatggcctaattccagaaactactacattagaaagaaaagttgacaaaagaggc
aaaaaaatctatcttgattatatgcaaaatgtcaaaggtaaaaccatttctgtagtttat
ggtacaaggccactaaaaaacgcacctgtttctgcgcctattaaatggaaagaacttgat
gatgcgaccttgaggccggatagctttaatatttttaacatctttcaaaggttagaagaa
tatggagacttgttttatccggctcttacggataagcagaaaattgataacttactttag
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