Nocardiopsis changdeensis: KGD84_26210
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Entry
KGD84_26210 CDS
T08932
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KGD84_26210 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_26210 (ligD)
Enzymes [BR:
ncg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KGD84_26210 (ligD)
DNA repair and recombination proteins [BR:
ncg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KGD84_26210 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QUX21838
LinkDB
All DBs
Position
complement(5867846..5868889)
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AA seq
347 aa
AA seq
DB search
MPPAVVEGPGRVGRPPLGPGREWCARTSRPCRAPGERFSSVWVGDLREVVAVGDGVRIRA
GRRVVEVKRPDKELFGAGGPTKEDLARYHLRIAPLMLPHLKGRPVALERYPGGVGKTGFF
VKHPSVPDWVRTLEIEGEPMMEARDAATLVWCADQAAITLHAWQSREPRLGRPDLLILDL
DPPDTDPGAFAACKAAARDAREVLEEAGLAAYVMTTGSKGLHVRSPLRPELDDQEVRDLA
KLLAERVAERAPGERTTEVRKNKREGRLFVDYLRNGREQLAVAPYSVRVREGAPVAAPLF
WEELDGLESPRAFGLDLEREECPFRGMHRRARSPKRARDRLGRPRAA
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgcctccggctgtggttgagggccccggtcgggtgggccgaccccctctggggccgggc
cgggagtggtgtgctcgcacgtcacggccctgccgggctccgggtgaacggttttcctcc
gtgtgggtaggggacctccgggaggtggtcgccgtgggggacggtgtgaggatccgggcg
gggcgccgggtggtcgaggtgaagcgcccggacaaggagctcttcggggcgggcggcccc
accaaggaggacctggcccgctaccacctgcggatcgcgccgctgatgctgccgcacctc
aagggccgcccggtggcgctggagcgctatcccggcggcgtcggcaaaaccgggttcttc
gtcaagcacccctcggtgcccgactgggtgcgcaccctggagatcgagggcgagccgatg
atggaggcccgcgacgccgccaccctggtgtggtgcgccgaccaggccgcgatcaccctg
cacgcctggcagtcccgcgaaccccgcctgggccggcccgacctcctgatcctcgacctg
gacccgcccgacaccgaccccggcgcgttcgccgcctgcaaggcggccgcccgggacgct
cgcgaggtcctggaggaggcgggcctggccgcctacgtcatgaccaccggctccaagggc
ctgcacgtccgttcgccgctgcgccccgagctggacgaccaggaggtccgggacctggcg
aagctcctcgcggaacgggtggccgagcgcgcacccggggagcgcaccacggaggtgcgc
aagaacaagcgtgagggccgcctgttcgtcgactacctccgcaacggccgcgagcagctg
gcggtcgccccctactcggtccgggtccgcgagggcgccccggtggccgcgccgctgttc
tgggaggagctggacggcctggagtcgccccgcgccttcggcctggacctggagcgggag
gagtgtcccttccggggcatgcaccgccgcgcccgctccccgaagagggcgcgcgaccgg
ctcggccgaccgcgcgccgcctga
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