Nocardiopsis changdeensis: KGD84_27425
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Entry
KGD84_27425 CDS
T08932
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KGD84_27425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_27425 (mfd)
Enzymes [BR:
ncg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KGD84_27425 (mfd)
DNA repair and recombination proteins [BR:
ncg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KGD84_27425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QUX22050
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All DBs
Position
6155323..6158919
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AA seq
1198 aa
AA seq
DB search
MSLTGLLADVSRDPALHSAIETARGGRDPHLDLVAPAALRPFMVGALAADAPLGAGRPVL
AVTATEREAADLADALGSLLPENSVALFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPD
PSDPLTTPLRVVVAPVRSVLQPLVAGLGDLEPVRVRQGDEVSLEDVVRSLADTGYSRVDL
VEKRGDMAVRGGILDVFPPTEEHPLRLEFWGDSVEDIRYFQVADQRSIAAGEGGDHGDAA
SGLFAPPCRELLLTDTVRERARALAAEHPALAEVLTKLADGVAVEGMEAFAPVLAERMEP
LLELLPEGAMVVGCDPERIRTRAIELEATSAEFLEASWINAASGGESPIDLGASAYMSIA
DLRSLASRLGTPWWGLTPFSSGEAGTREEDDAVVVGAVPADSYRGDTERALADIKGWLHD
NWSVVLVTQGHGPAERLVAMLRDAGLGADLVQDLAGPPAPAVATVTTGLVDHGFLLRTVR
TVVLTETDLAGQKSSTRDMRRMPSRRKGTVDPLQLKPGDYVVHEQHGVGRYLEMVSRQIQ
GATREYLLIEYAPSKRGQPGDRLFVPTDQLGEVTRYVGGDAPALSKMGGAEWSKAKSRAR
KVVREIAGDLIRLYSARQASPGHAFGPDTPWQRELEDAFPYVETPDQLAAIEEVKKDMGR
SVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVALLVPTTLLVQQHLSTFTERYASFPV
TVKPMSRFQTDAEVELTREGLRSGEVDVVIGTHRLLSSETRFKDLGLVIIDEEQRFGVEH
KEALKRLRTQVDVLAMSATPIPRTLEMGLTGIREMTTILTPPEERHPVLTFVGPYEDKQI
TAAIRRELMREGQVFFVHNRVASIDRVAAEIKRLVPEARVAYAHGQMNEQQLEKVMVDFW
EKNFDVLVSTTIVESGLDVPNANTLIVDRADTYGLSQLHQLRGRVGRGRERAYAYFLYPP
EKPLTETAYERLATVAQHTETGAGMYVAMKDLEIRGAGNILGAEQSGTIAGVGFDLYVRM
VGEAVAELKGDQSAAEETETRVELPVNAHIPHDYVPGERLRLQAYKRIAGITCEDDVLAA
YEELTDRYGAPPRPVDNLMAVARFRVLARAAGLQDVVLQGNQIRFTPVELRESQELRLRR
MYPKSLLKEATRTLLVPVPKAGGMGGKPLRDLELLAWCTELVNAIFEPDKRKPPVAKD
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcactggacttctcgccgacgtctcacgggacccggcactgcacagcgcgatc
gagaccgcccgcggcggccgcgatccccacctcgacctcgtcgcacccgcggcactgcgc
cccttcatggtcggcgcgctggcggccgacgcgcccctgggcgccggccgccccgtcctg
gccgtcaccgccaccgagcgggaggccgccgacctggccgacgcgctgggttcgctgctg
cccgagaactccgtcgcgctgttccccgcgtgggagacactgccgcacgagcggctgtcc
ccgcgctcggacaccgtcggccggcgcctggccgtgctgcgcagactcgcccaccccgac
ccctccgacccgctgaccacaccgctgcgggtcgtcgtcgcgcccgtgcgcagtgtgctc
cagcccctggtcgccggactgggcgacctcgaacccgtccgggtccgccagggcgacgag
gtgtccctggaggacgtcgtgcgctccctggccgacaccgggtactcccgggtcgacctg
gtggagaagcgcggcgacatggccgtgcgcggcggcatcctcgacgtgttcccgcccacc
gaggagcacccgctgcgcctggagttctggggcgacagcgtcgaggacatccgctacttc
caggtcgccgaccagcggtccatcgcggccggcgagggcggcgaccacggcgacgccgcc
tccgggctgttcgccccgccctgccgggagctgctgctcaccgacaccgtccgggagcgc
gcccgcgccctggccgccgagcacccggcgctggccgaggtcctcaccaagctcgccgac
ggcgtcgccgtcgagggcatggaggccttcgcccccgtgctcgccgagcgcatggaaccg
ctcctggagctgctccccgagggcgccatggtggtgggctgcgaccccgagcgcatccgc
acccgcgccatcgaactggaggccaccagcgccgagttcctcgaggcgtcctggatcaac
gccgcctccggcggcgagtcgcccatcgacctgggcgcctccgcgtacatgtccatcgcc
gacctgcgctccctggcctcccggctgggaacgccctggtgggggctgaccccgttcagc
tccggcgaggccggcacccgcgaggaggacgacgccgtggtggtgggcgcggtgcccgcc
gactcctaccgcggcgacaccgagcgcgccctggccgacatcaagggctggctgcacgac
aactggagcgtcgtgctggtcacccaggggcacggccccgccgagcggctcgtggcgatg
ctgcgcgacgccgggctcggcgccgacctggtccaggacctcgccgggccgcccgccccg
gccgtggccaccgtgacgaccgggctggtcgaccacgggttcctgctgcgcacggtgcgc
accgtcgtgctcaccgagaccgacctggccgggcagaagtcctccacccgcgacatgcgg
cgcatgcccagccgccgcaagggcaccgtcgacccgctccagctcaagcccggcgactac
gtcgtccacgagcagcacggcgtgggccggtacctggagatggtcagccgccagatccag
ggcgccacccgcgagtacctgctcatcgagtacgcgccgtccaagcgcggccagcccggc
gaccggttgttcgtccccaccgaccagctcggcgaggtcacccggtacgtcggcggcgac
gcgcccgcgctgtccaagatgggcggcgccgagtggagcaaggccaagagccgcgcccgc
aaggtggtccgggagatcgcgggcgacctcatccggctgtactcggcccgccaggcctcg
cccgggcacgcgttcggccccgacacgccctggcagcgggagctggaggacgcgttcccc
tacgtggagacgcccgaccagctcgccgccatcgaggaggtcaagaaggacatggggcga
tccgtccccatggaccggctgatctgcggcgacgtcggctacggcaagaccgaggtggcg
gtgcgggccgcgttcaaggcggtgcaggacggcaagcaggtggcactgctggtgcccacc
accctgctggtgcagcagcacctgtccacgttcaccgagcggtacgcgtccttccccgtc
accgtcaagccgatgtcgcggttccagaccgacgccgaggtggagctgacccgggagggc
ctgcgctccggcgaggtcgacgtggtcatcggcacccaccggctgctgtcctccgagacc
aggttcaaggacctgggcctggtcatcatcgacgaggagcagcggttcggcgtcgagcac
aaggaggccctcaagcggctgcgcacccaggtggacgtgctcgccatgtcggcgacgccg
atcccgcgcaccctggagatgggcctgaccggcatccgggagatgaccaccatcctcacc
ccgccggaggagcgccacccggtgctgaccttcgtcggaccgtacgaggacaagcagatc
accgcggcgatccgccgggagctgatgcgcgagggccaggtgttcttcgtgcacaaccgg
gtcgcgtccatcgacagggtcgccgccgagatcaagcggctggtgcccgaggcgcgggtc
gcctacgcccacggccagatgaacgagcagcagctcgagaaggtcatggtggacttctgg
gagaagaacttcgacgtgctggtctccacgaccatcgtcgagtccggcctggacgtcccc
aacgccaacacgctgatcgtggaccgcgccgacacctacggcctgtcccagctgcaccag
ctgcgcggccgggtcggccgcggccgcgagcgggcgtacgcgtacttcctgtacccgccg
gagaagccgctcaccgagaccgcctacgagcggctggccaccgtcgcccagcacaccgag
accggtgcgggcatgtacgtggcgatgaaggacctggagatccgcggcgcgggcaacatc
ctgggcgcggagcagtcgggcaccatcgccggggtcggcttcgacctgtacgtgcgcatg
gtcggcgaggccgtcgccgagctcaagggcgaccagagcgccgccgaggagaccgagacc
cgcgtcgagctgccggtcaacgcgcacatcccgcacgactacgtgccgggcgagcggctg
cggctccaggcgtacaagcggatcgcgggcatcacctgcgaggacgacgtgctcgccgcc
tacgaggagctcaccgaccggtacggcgccccgccccggccggtggacaacctcatggcg
gtggcccggttccgggtcctggcccgcgcggcggggctccaggacgtggtgctccaaggc
aaccagatccggttcaccccggtggagctgcgggagtcgcaggagctgcggctgcggcgg
atgtaccccaagtcgctgctcaaggaggccacccgcaccctgctggtgccggtccccaag
gcgggcggcatgggtggcaagccgctgcgcgacctggagctgctggcctggtgcacggag
ctggtcaacgccatcttcgagccggacaagcgcaagcccccggtcgccaaggactga
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