Neisseria canis: NCTC10296_01557
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Entry
NCTC10296_01557 CDS
T06799
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nci
Neisseria canis
Pathway
nci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10296_01557 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nci03400
]
NCTC10296_01557 (mfd)
Enzymes [BR:
nci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10296_01557 (mfd)
DNA repair and recombination proteins [BR:
nci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10296_01557 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
VEF01980
UniProt:
A0A3S4SGQ4
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All DBs
Position
1:complement(1649308..1652736)
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AA seq
1142 aa
AA seq
DB search
MNYPIPAPAQKSRWLGLSRGSLPLMLTECLPEQPVKIILTQDVEQALRLQTAWQFFRPQD
NAVFLPDWETLPYERFSPHQDLVSERLSALWQLKNGQADVLVVPVATAMQKLAPVSFLLG
RTFWLKTGQTLDIDALRENLIEAGYSHVSNVIAAGEFAVRGGILDIFPMGAELPYRLDMF
DDEIDSIKTFDPDTQRTLAPVSEIRLLPAHEFPTDDDAQKIFRSRFREEIEGDYNAAAVY
KAVSNGHFGAGVEYYLPLFFENECATLFDYIGEEAVVVCLGDVHAEAARFWADVKTRYAM
AQGDDAYPPLHPQHLYLSEDQFAGRLKPYGQILPDFHGKQHALPDVAVNRQSETPLAALQ
SFQTAFNGKVLLCAESAGRRETMLGFMQQHGLKAQSVDGWQSFLDSDAPLCITVTQLAYG
FQLPSEQADSTDLPYFSDGLAVITESDLYQYVARSRTARRKKHAQVSDGLLRDLAEINIG
DPVVHEEHGIGRYMGLVSMDLGEGSTEMMLLEYANEAQLYVPVSQLHLISRYSGHAYENV
QLHRLGTAAWNKAKRKAAEKARDTAAELLNLYAQRAAQEGFKFQFNELDYQAFSDGFGYE
ETEDQAAAIAAVLKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTL
LVEQHAQNFSDRFADFPVKVAQLSRFNSSKETKATLAGMADGTVDIVIGTHKLVQDDIRF
KNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEGLRDFSLITTAP
SRRLAVKTFVKPFSEASVREAVLRELKRGGQVFFLHNEVETIENMRERLQELLPEARIGV
AHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPEYITKDAEKRLDAISAADELGAGFTLAMQDLEIRGAGEILGEG
QSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALLPESYCPDIHE
RLVLYKRLATCETEGQINSVHEELVDRFGLPEQPVKTLIESHRIRLIAKEMGIDAIDATS
DAVTLTFGKHHNIDPAQIILLMQSNKNYRMAGADKLGVSAVMEDVETRIQTVKAVLKKLG
EK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaattatcccatccccgcccccgcccaaaaatcccgctggctcggcctttcgcgcggc
agcctgcctttgatgcttaccgaatgcctgcctgaacaacctgtaaaaatcattctcacg
caagatgtggagcaggctttgcggctgcaaaccgcgtggcagtttttccgcccgcaggat
aatgcggtgtttctgcccgattgggaaacgctgccctacgaacgtttttcgccgcatcag
gatttggtttcggagcggctttctgccttgtggcagctgaaaaacgggcaggccgacgtg
ttggtggtgccggtggccaccgctatgcagaagctcgctccggtgtcgtttctgctcggg
cgcacgttttggctgaaaaccggccagactttggatatcgacgcgctgcgggaaaacttg
attgaagcgggttacagccatgtttccaacgtgattgccgccggcgaatttgcagtgcgc
ggcggtattttggatatttttccgatgggcgcggagttgccgtaccgcctcgatatgttc
gacgatgaaatcgacagcatcaaaactttcgaccccgacacccagcgcacgcttgctccg
gtaagcgaaatccgcctgctgcccgcgcacgagttccccaccgatgacgacgcgcaaaaa
atcttccgcagccgtttccgcgaagaaatcgagggcgactataacgccgccgccgtgtac
aaagccgtgagcaacggccatttcggtgcgggcgtggaatattatctgccgctgtttttt
gaaaacgaatgcgccacattgttcgactatatcggcgaagaagccgttgtcgtgtgcctc
ggcgacgtacacgccgaagctgcgcgcttttgggcggacgtgaaaacccgttatgcgatg
gcgcagggcgatgatgcttacccgcctttgcatccacagcatttgtatctcagcgaagac
cagtttgcaggccgtctgaaaccttacgggcaaatcctgcccgacttccacggcaaacaa
cacgcgctgcccgatgtggccgtgaaccgccaatccgaaaccccgctcgccgcactgcaa
agttttcagacggcctttaacggtaaagtgttgctgtgtgccgaaagtgcaggccgccgc
gaaaccatgctcggctttatgcagcagcacggcttgaaagcgcaaagtgtggatggctgg
cagtcgtttttagacagcgatgcgccgttgtgcattaccgtaacgcagttggcttatggg
tttcagttgccgtctgaacaggccgacagcacagacttgccctatttttcagacggcctc
gccgttatcaccgaatccgacctctaccaatacgtcgcccgcagccgcaccgcacgccgt
aagaaacacgcccaagtttcagacggccttttgcgcgatttggccgaaatcaacatcggc
gatcccgtggtacacgaagagcacggcataggccgctatatgggcttggtcagcatggat
ttgggcgaaggcagcaccgaaatgatgctgctcgaatacgccaacgaagcccagctttat
gtgcccgtgtcgcagctgcacctgatcagccgctattccggccatgcctatgaaaacgtg
caactgcaccgtttgggcactgctgcgtggaacaaagccaaacgcaaagccgccgaaaaa
gcccgcgacaccgccgccgaactactcaatctctacgcccaacgtgccgcacaagaaggc
tttaaattccagtttaacgaattggactaccaagccttttcagacggcttcggctacgaa
gaaaccgaagaccaagccgccgccatcgccgccgtactcaaagacctcacccaaggcaaa
ccgatggacaggctcgtgtgcggcgatgtcggcttcggcaaaaccgaagtcgccctgcgc
gccgccttcgtggccgtaatgggcggcaaacaagtggccgtgctcgcccccaccacgctg
ctggtggaacaacacgcacaaaatttcagcgaccgcttcgccgattttcccgttaaagtc
gcccagctttcccgcttcaacagcagcaaagaaaccaaagccacgctcgccggcatggcc
gacggcacagtcgatatcgttatcggtacgcacaaacttgtgcaagacgacatccgattc
aaaaacttgggtttggtgattatcgacgaagaacaccgcttcggcgtgcgccaaaaagag
cagctcaaacgcctgcgcgccaacgtcgatatcctcacccttaccgccacccccattccg
cgcaccctcagcatggcgctcgaaggcttgcgcgatttctcgctcatcaccaccgcgccc
agccgccgtttggccgttaaaaccttcgtcaaacctttcagcgaagccagcgtgcgcgaa
gccgtgttgcgcgaactcaaacgcggcgggcaagtattctttttacacaacgaagtcgaa
accatcgaaaacatgcgcgaacgcctgcaagagttgctgcccgaagcacgcatcggcgtt
gcccacggtcaattgcgcgagcgcgaactcgaacaagtgatgcgcgacttcctgcaacag
cggttcaacctgctgctgtgttccaccatcatcgaaaccggcatcgacatccccaacgcc
aacaccatcatcatcaaccgcgccgacaaattcggccttgcccaactgcaccaactgcgc
gggcgcgtcggccgcagccaccaccaagcctacgcctacctgctcacacccgaatacatc
accaaagatgccgaaaaacgcctcgatgccatttccgccgccgacgaactcggcgcaggt
tttacccttgccatgcaggatttggaaatccgcggtgccggcgaaatcctcggcgaaggg
caaagcggcgaaatgatgcaggtcggcttcaccctctacaccgaaatgctcaaacaagcc
gtgcgcgacctcaaaaaaggccgccaacccgacctcgacgcaccgctgggcgtaaccacc
gaaatcaaactgcacagccccgcgcttttgcccgaaagctattgccccgacatccacgaa
cggctcgtgctctataaacgcctcgccacctgcgaaaccgaaggccaaatcaacagcgtg
cacgaagaactcgtcgaccgcttcggcctgcccgaacaacctgtgaaaaccctaatcgaa
agccaccgcatccgcctgattgccaaagaaatgggcatagacgcgatcgatgccaccagc
gacgccgttaccctcaccttcggcaaacaccacaacatcgaccccgcgcagattatcctg
ctgatgcaaagcaacaaaaactaccgcatggccggtgcggacaaattaggcgtaagcgca
gtgatggaagatgtggaaacacggattcagacggtgaaagcggttttgaagaaattgggg
gagaagtga
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