KEGG   Nitrosopumilus cobalaminigenes: C5F47_03280
Entry
C5F47_03280       CDS       T06688                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ncl  Nitrosopumilus cobalaminigenes
Pathway
ncl03030  DNA replication
ncl03410  Base excision repair
ncl03420  Nucleotide excision repair
ncl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C5F47_03280
   03410 Base excision repair
    C5F47_03280
   03420 Nucleotide excision repair
    C5F47_03280
   03430 Mismatch repair
    C5F47_03280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncl03032]
    C5F47_03280
   03400 DNA repair and recombination proteins [BR:ncl03400]
    C5F47_03280
Enzymes [BR:ncl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C5F47_03280
    6.5.1.6  DNA ligase (ATP or NAD+)
     C5F47_03280
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     C5F47_03280
DNA replication proteins [BR:ncl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    C5F47_03280
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     C5F47_03280
DNA repair and recombination proteins [BR:ncl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     C5F47_03280
   NER (nucleotide excision repair)
    Other NER factors
     C5F47_03280
   MMR (mismatch excision repair)
    Other MMR factors
     C5F47_03280
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QLH02649
UniProt: A0A7D5M323
LinkDB
Position
complement(557104..558870)
AA seq 588 aa
MEFAILAESFNKMESTRKRLELTQFLVELFEKTPHDVISKIVYLIQGKLRPDFEGIELGV
AEKLAIRAISKSSGIPIKKIEDEYRKGGDLGHASSIILEQKTQTTFLVEDITVERVYDTL
FKIAKLGGSRSQDMKMKYISSLLNDATPLEASFILKILLGTLRLGIAENTVMDALAIAFS
GDKENRKKLQYAYNVSSDLGKVAETIATKGLEGIEKFEIVLFNPIRPMLADRVKSEQEAI
EKMGNEFAAEYKLDGERVQLHIEGEKVELFSRSLERIESYYPDIIEKIPKNILADNIILE
AEAVAINENTGEFLPFQELMHRRRKYKIEKAVTEYPITVNFFDILFCNGKSCVELSYKER
REKLEKHVKEDEFSKYIPMSTVKNESEIEDFMENSINAGSEGLMLKMLDKPYQAGSRGSH
WLKLKREYRNELGDSLDLVVIGGFFGKGRRTGSYGTLLLATYDEDEDTFPSICKVGTGFS
DESLDQLYQILHPKVSIKKNPRIVSEMEADVWFEPELVIEVVASEITLSPIHKAALDVIR
KDAGLALRFPKFTGKIRVEKAVEDASTNEEVISLYKGQKKVAHDKNLM
NT seq 1767 nt   +upstreamnt  +downstreamnt
atggagtttgcaattttagctgagtcatttaacaaaatggaatcaactagaaaaagacta
gaattaacacaatttttagttgaactatttgaaaaaacaccgcatgatgtaatatcaaaa
atagtatacctcattcaaggaaaattaagaccagactttgaaggaattgagttaggagtt
gcagagaaacttgcaattagagcaatttcaaaatcttcaggaattcctattaaaaaaatc
gaagacgaatacaggaaaggcggagatctcggccatgcatcttcaataattttggaacaa
aaaacacagactacatttctagttgaagacattactgtagaaagagtatacgatacatta
ttcaaaattgcaaaactaggaggatctagatctcaagatatgaaaatgaaatacatttct
agtttgctaaatgacgcaaccccattagaggcaagttttattttgaaaattttgttagga
actttgagactaggaattgcagaaaatactgtaatggatgctttagcaatagcattttca
ggagataaagaaaatagaaaaaaacttcaatatgcgtacaacgtatcaagcgacttgggc
aaagttgcagaaactattgcaacaaaaggcctagaaggaattgaaaaatttgaaattgtt
ttgttcaatccaatcagaccaatgttagctgacagagtgaaaagtgaacaagaagcaatt
gaaaagatggggaatgaatttgctgcagaatacaaactagacggagaaagagttcaatta
cacattgaaggggaaaaagtagaattattttctaggagtttagaaaggattgaaagttat
tatccagacattattgaaaaaattcctaaaaacatacttgcagacaacataattttagaa
gcagaagctgttgcaataaatgagaatacaggagaatttctaccatttcaagaactaatg
catcgaagaagaaaatacaaaatagaaaaagcagttacagaatatccaatcacagtaaac
ttttttgatattttattttgtaatggcaaaagttgtgttgaattaagttacaaagaacga
agagaaaaacttgaaaaacatgtcaaagaagatgaattttcaaagtacattccaatgagc
acggtaaaaaatgaaagtgaaattgaagactttatggaaaacagtatcaatgcaggaagc
gaaggtttgatgttaaagatgctagataaaccatatcaagcaggttccaggggcagtcat
tggttaaagcttaaacgcgaatatagaaacgagttgggcgatagtttagaccttgtcgta
atcggtggattttttgggaaaggaagaaggacaggaagttatggaacattactcttagcc
acatatgatgaagatgaagatacgtttccaagtatttgcaaagtaggaacaggtttttca
gatgaatctctagatcagttatatcaaatattacatcccaaagtttcaattaaaaaaaat
ccacgaatagtaagtgagatggaagcagatgtatggtttgaaccagaattagtaatcgag
gtagttgcatcagaaatcactcttagtccaattcacaaagcagcactagatgtaattcgc
aaagatgcaggactagcattaagatttccaaaattcacagggaaaattagagttgaaaaa
gcagtagaggatgcatcaacaaatgaggaagtcatctcattatacaaaggtcagaaaaaa
gtagcacatgacaaaaatttgatgtga

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