Nymphaea colorata (blue-petal water lily): 116255403
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Entry
116255403 CDS
T07418
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116255403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116255403
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
116255403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_19
TPR_16
TPR_8
TPR_12
TPR_9
TPR_7
TPR_15
BTAD
Motif
Other DBs
NCBI-GeneID:
116255403
NCBI-ProteinID:
XP_031487062
LinkDB
All DBs
Position
6:23274333..23340577
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AA seq
1160 aa
AA seq
DB search
MEGQEFDVQNPSHHFDMAVFLWEKGEDKKVAREKAAEHLVLSVKLNPSNGAAFRLLGHYY
SLELVDLQRSSKCYQRAITINPDDNEAGEALCNLLDRGGNQSLQLTICHEVVEKSSRAFW
AWRRLGYLQVAEKMWPDAVQSLQHAIRGYPTCPDLWEALGLAYQRLGMFSAALKSYGRAS
ELDNTRVFALLGSGNILMLLSSYRKAVDMFREAAKIAPQNVSAHYGLASALLGMSRDCIN
SGAFWWGASLLEEASVITRGCCHTAGNMSPLWKLLGDIEMTYAKCSPWSQENGCCEIDEA
AFAASILTWKEKCQLAAVTANRAYQKTLHLTPWQANMYADVAISLDYICSLKQLKPNDGT
DRQLAEKMSLGGLVLECSNSEFWIALGCLANYGALQQHALIRGLQLCVSHAASWSYLGKL
FHKEGHVVISKQTLDRARSLDPSLPLPWAAMLTNSSAGDISWDEAFENCLHSVRLLPVVE
FQLGLAKLAFISGHLQSSQVFVAITQAVQRAPHYPEGHNLYGLVCEARSDYCSAIAAYRR
ARFAANVSTVATPSSCKHDITANLSRALCVAGHFLDGTRECKVLEEEGFLDNRGLLIYAV
ALWELGKTDRALSIAKHLTASVSYSDLKTAADVFGLICKLLYHIVGMKYTWPVILKKKDT
LLQRSRNVFLIASVKALNTSEHLETFFSSGIESLLSHEEASKLHSLIAMAKWLSCGSNRE
VGISCAKKHLKRSLHIYPHSVSIRNQLSSLLIWDKNWKAAHCVSNCTGMGTSMYLTSKLS
EPSYENLGSAAVSCYSSCSRNTSFSTCEDRHTCRVKPTHLLQKWCHQQPWNHKPKYLIIV
TFYQEARERKFPRHICYMLKRLLMSAFASETSAGNCETYQKLMLLLCASELCLQCGDYSG
CLHYATDASQLSLPNGVLFFSHFQLCRAYSSVGDLGALQVEYQKCLQIGTCYEIGWLLLK
FLECTFKLKSGSNTIDMNFEACLKEKGSCWYRWMALFNLVDIQIFISDQEFLLAEALLRR
VCSHQVDACLLFLHGVVCMEVARKQSDSNFLSLAVKSLSKAREMKVFPLPIVSVMLAQAH
ASVGAKSNWERDLRLEWYSWPAENRPVELYFLMYLVARQSKEASEIESSQAPVKWFLHAI
HLNPSCLRYWKVLQKVKGQP
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggagggacaagaatttgacgtgcaaaacccttctcatcatttcgacatggctgtcttc
ttatgggagaaaggagaagacaagaaggttgcgagggagaaagcagctgagcatttggtc
ctctcagttaagctaaacccaagcaatggcgcagcgtttcgccttctagggcattactac
agcctggagttggtcgatttacagcggtcatccaagtgctaccagagggcaatcaccatt
aaccctgacgataacgaggctggggaggcgttatgtaatttgttggacagaggaggaaac
cagtctttgcagctgacaatctgccatgaagtggtggagaagtcctcccgagcattctgg
gcatggcggagattagggtacttgcaggttgctgaaaagatgtggccagatgcagttcag
agccttcagcatgcaattcgaggctatccaacatgtccagatttatgggaagccctagga
cttgcatatcagcggttgggcatgttcagtgctgccttaaagtcatatggacgtgcatca
gagctcgataacacaagagtttttgcattacttgggagcggtaacattttgatgttactt
agttcttataggaaggcagttgatatgtttcgtgaagctgcaaagattgcacctcaaaat
gtgtctgcacattatggacttgcttctgctcttcttggaatgtcaagagattgcattaat
tctggtgcattttggtggggtgcttctctattagaggaagcttctgtcattaccagaggc
tgttgtcacactgcaggaaacatgtcgcccctttggaagttgcttggggatattgagatg
acctatgcaaaatgttcaccatggtcacaagaaaatggatgttgtgaaattgatgaggca
gcttttgcagcctctatcctgacttggaaggagaagtgccaattggctgctgttactgca
aaccgtgcttatcaaaaaactctgcatttgactccatggcaggcaaacatgtatgctgat
gttgcaatttctttggattacatttgttccctgaaacaattgaaaccaaatgatgggact
gatcggcagctagcagagaagatgtcacttggtggattggttcttgagtgcagcaacagt
gagttttggatagccttagggtgtttggccaattatggagcattgcagcaacatgcactc
attaggggattgcagttgtgtgtttctcatgctgcatcatggtcttaccttggaaagctc
tttcataaggagggacatgtggtcatttcaaagcaaactttagatcgtgctagaagttta
gatccttcacttcccttgccatgggctgccatgttgaccaacagttctgctggggatatt
tcatgggatgaggcttttgagaactgtcttcattcagtcagattgttgcctgtagtagaa
ttccaacttgggcttgcgaagcttgctttcatttctggtcatttgcaatcttcacaggta
tttgtggccatcacacaggcagttcagcgtgcaccccactatcctgaaggccataatttg
tatggactagtttgtgaggccagatctgattattgttctgcaattgctgcctataggcgt
gcaagatttgctgccaatgtttctacagtggcaacacctagttcttgcaaacatgacata
acagctaatctttctagagctctttgtgtggctggacattttcttgatggtactcgtgag
tgcaaagtgttggaagaagaaggctttctggataatagaggcttgctcatatatgcagtt
gcattatgggaacttggtaaaactgatcgagctctgtctattgcaaaacatctgactgcc
tcagtatcatattcagatctgaaaactgccgctgatgtattcgggttgatatgcaaattg
ctttatcacatagtgggcatgaaatacacttggcccgttattctgaaaaagaaggacact
ttgttacaaaggtcaaggaatgtttttctcattgcttcagttaaggctctcaacactagt
gagcatttggaaacatttttctcaagtggaatcgagtccctgctgtctcatgaggaggct
tccaaacttcattccttgattgccatggcgaaatggctttcatgcggatcaaatcgagaa
gtggggatttcttgtgctaagaaacatcttaaaaggtcccttcacatctaccctcatagt
gtttcaataaggaatcaattaagttcacttctaatatgggacaaaaactggaaagctgct
cattgtgtctcaaactgcacaggcatgggcacatccatgtacttgacatctaaactttca
gaaccttcatatgaaaatcttggttctgcagcagtttcatgctattccagctgttccaga
aatacatccttctctacatgtgaggatcgacatacttgtcgagtgaaaccaacacatctg
ttgcagaaatggtgtcatcaacagccttggaaccataagccgaaatatttgatcattgtt
actttttaccaggaagcccgtgaaaggaaatttcctcgacatatttgctacatgctaaaa
cgtcttctcatgtctgcttttgcaagtgagacttctgctggaaactgtgaaacttatcag
aagcttatgcttctcctctgtgcttctgaactctgtctccaatgtggggattattctgga
tgtcttcactatgctacagatgcatcacaactttctctccccaatggtgttcttttcttt
tcacattttcagttatgtagagcttattcgtctgttggtgacttgggtgcacttcaagtt
gagtatcaaaaatgcctgcaaattggcacctgctatgaaattggctggttattgctcaaa
ttccttgagtgcacattcaaattaaagtctggttcaaatacaattgacatgaactttgaa
gcttgtctgaaggagaagggtagctgctggtacaggtggatggctctcttcaatctagtg
gacatccagatttttatttcagatcaggaatttctccttgcagaagctcttcttcgtcgt
gtttgttctcatcaagttgatgcatgtcttttatttctccatggtgtggtctgtatggag
gttgctaggaagcagtcagactcaaacttcctgtctcttgctgttaagagtctctccaaa
gcccgagagatgaaagttttcccgttgccaattgtttcggttatgttagcccaggcacat
gccagcgtaggtgccaaaagtaactgggagagggatttgcgactggaatggtattcttgg
cctgcagaaaacaggcctgtggagctctattttcttatgtatctagttgccagacagtct
aaagaagcatctgagatcgagtcatcgcaagcacctgttaaatggttcctccatgctata
catcttaatccatcatgcctgaggtactggaaagttttgcagaaggtgaaaggccaacct
tga
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