Nymphaea colorata (blue-petal water lily): 116255619
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Entry
116255619 CDS
T07418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116255619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116255619
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116255619
Spliceosome [BR:
ncol03041
]
Complex A
U2 snRNP components
U2 related factors
116255619
Complex B
116255619
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
116255619
NCBI-ProteinID:
XP_049933774
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All DBs
Position
1:22756164..22761280
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AA seq
1153 aa
AA seq
DB search
MEDGKHRSRKDDSEKKEEGRSRDRDRDREREREKNRDREKDRERNGERHKDRDRARDRDH
RRGEREKSSEDKYREKHRDSSRKESESDGRSSRRRDEKERAKEKEREREREERERDEKER
AREREREKERDEKERAREKEKEERERTRERERDRERERVRERDKRRDSEDRDTEEMRDHE
RKRRRREEDSGRERDRDRDRERERSRSDRHKEESEEDGKRRKGVEEIEGKDKKSREERLE
EEQRKLDEEMDKRRRRVQEWQELRRKQEESEREKQGAEKAGKNWTLEGEESDDEEAVPDA
NTDAPPKDSDMNEVVKPATGSDDFMMDDSENGTGTNTNQTEQTNDEEEIDPLDAFMNSMV
LPEVEKLNSAVENSAVDIKMDEGENKSLKEVRNSIKEIKKGPKKGMGRILPGEASDSDYE
EPEDDEVPLEEEDDDEFMKRVKKTKAEKLSIVDHSKIQYAPFRKNFYIEVKEIFKMTSEE
VSAYRKQLELKIHGKDVPKPVKTWNQTGLSTKILEVIKKLNFERPMPIQAQALPIIMSGR
DCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHGDIKKFSK
VMGLNCVAVYGGSGVAQQISDLKRGTEIVVCTPGRMIDILCTSGGKITNVRRVTYLVMDE
ADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVN
RDITQRVEVRPEEEKFLRLLELLGEEYEKGKILIFVHSQEKCDSLFKDLLKHGYPCLSLH
GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVVNFDVPNHYEDYVHRVGRT
GRAGRPGKAFTFISEDEARYAPDLVKALELSEQVVPADLKALADGFMAKVTQGTEHAHGT
GYGGSGFKFNEEEDEARKAAKKAQAREYGFEEDKSDSDSEDEGVRKAGADLSQAATFAQV
AALAAASKAAITTAPSPATTAPFLPNGGLGVLPSLAIPGLQSLPGAASLSVLPNDAAARA
TALAAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNCRWKVTHKETLGPISEWTGAAIT
TRGQYFPPGKIPSPGERKLYLFIEGPTESSVKKAKAELKRVLEDYTAQALSLPGAGQPGV
PFKCGYLPIAVQM
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggaggacggtaagcatcgttctcggaaggatgactcggagaagaaggaagaagggagg
agtcgagatcgtgaccgggatcgcgaacgggagagagagaagaatagggatagggagaag
gatcgagagaggaacggggagaggcataaggacagggacagggcaagggatcgtgatcac
cggaggggagagcgcgagaagagttcggaggacaaatacagagagaagcacagggattcc
tcgaggaaggagtctgagagcgatgggaggagtagcaggcgtcgggatgagaaggagcgg
gcaaaggagaaggaaagagaaagagaaagggaagagagggagagagatgagaaggaaaga
gctagagaaagggagagggagaaggagagggatgagaaggaaagagctagagaaaaggag
aaggaggaaagggaaagaaccagggagagggaaagagacagggagagggaaagggtgagg
gaacgggataagcgcagagattctgaagacagagacaccgaagagatgagggatcatgag
cggaaaaggcggagaagggaggaagactcagggagagagagggaccgggatagggacaga
gaaagggaaaggagtaggtcagataggcacaaggaagaaagtgaagaggatggtaagagg
aggaaaggggttgaggagattgagggtaaggataagaagagccgggaggagcgtctggag
gaagaacagagaaagttggatgaggagatggataagaggaggaggagggttcaggaatgg
caagaattgaggagaaagcaagaagaaagtgaaagagagaagcagggagccgagaaagcc
gggaagaattggacattggaaggggaagaatccgatgatgaagaagccgtccctgacgcc
aatactgatgcaccaccaaaggattccgacatgaatgaagttgtaaaacctgccaccgga
agcgatgatttcatgatggatgattctgagaatgggaccgggacgaacacaaaccaaaca
gaacaaacgaatgacgaagaggaaattgatccactagatgccttcatgaactctatggtg
ctgcctgaagtggaaaaattgaatagtgcagttgagaactcagcggttgacatcaagatg
gatgaaggcgaaaacaagtctctgaaggaggtgcgtaacagtatcaaggaaataaagaag
ggccctaagaaaggtatggggaggattcttcccggagaagcttctgattcagattatgag
gagcctgaggatgatgaggttcctcttgaagaagaagatgatgatgaattcatgaaaaga
gttaagaagaccaaggctgagaagctatcaattgtcgaccactctaaaatacagtatgcc
ccatttcggaagaacttctatattgaagtgaaagagatattcaagatgacatctgaggag
gtttctgcttataggaaacaacttgaattgaaaatccacggaaaagatgttcccaagcct
gtcaaaacatggaatcagactgggttgtctaccaaaatccttgaagtcattaagaagctt
aactttgagaggccgatgccgattcaagcccaagctttaccaataattatgagtggccgt
gactgcataggtatagcaaagactggttccggaaaaactttggcatttgtgttaccgatg
ctccggcatatcaaggatcagcctcctgtggtcgctggtgacggacccattggccttata
atggcacctacaagagagctcgttcagcagattcatggtgatatcaagaagttttctaag
gtaatgggattgaactgtgttgctgtatatggaggctctggcgttgcccaacagataagt
gacctgaagagaggaacggaaattgttgtctgcacccctggtagaatgattgatatattg
tgcacgagcggtgggaagataaccaatgttcgcagagttacatacttggtcatggatgag
gctgatcggatgtttgatatggggtttgaacctcagatcacaaggattgttcagaatacc
aggccagatcgacagacagtccttttctctgcaacctttccccggcaagtggaaatattg
gctagaaaggtgctaacaaaaccagtggagatccaggttggaggaagaagtgttgttaac
agggacataacccaaagggtggaggtgagaccagaggaagagaaatttttgaggcttctc
gaactgttaggagaggaatatgagaaagggaagattctcatttttgttcactcacaggaa
aaatgcgattcgttattcaaggatttgctaaagcatggttacccatgtctttctctccat
ggtgccaaggatcagacagacagagagtcgaccatttcagatttcaaaagcaacgtttgc
aatctcttgatcgcaaccagcgttgctgccaggggactggatgttaaagagcttgaacta
gtggtgaactttgatgtcccaaaccactatgaagactatgttcaccgagttggtcgaacg
ggacgagcaggccgtccaggtaaggccttcactttcatctccgaggatgaggctagatat
gcacctgatcttgtgaaagccttggagctgtctgagcaagttgttcctgctgatcttaag
gcacttgctgatgggttcatggcaaaggtgactcagggaacggaacatgcacatggaaca
ggttatggtgggagtggttttaagttcaacgaggaggaagatgaagctcgtaaagcagct
aagaaagctcaagcgcgggaatatggctttgaagaagataagtccgattcagattcggaa
gatgaaggtgttcgtaaggcaggagctgatttatcacaggccgctacatttgctcaagtg
gcagctttggctgcagcttcaaaagctgcaattacaactgctccatcgccagcaaccaca
gctccattccttccaaatggggggctcggtgtcctgccttctttggccattcctggtcta
caaagtctgcctggagctgcatctctttcggtgctgcccaatgatgctgctgcacgagca
actgcattagctgctgcaatgaacttgcaacataatttggcaaaaatacaggcagatgcc
atgcctgaacattatgaagcagagttggaaattaatgatttccctcaaaattgtcgttgg
aaggtgacccacaaggagaccttgggtcccatctccgaatggactggagctgcaatcacc
accagaggacagtattttccacccggtaagatacctagtccaggggaaagaaaactgtac
ttgtttattgaaggtccaacagaatcatccgtcaagaaggctaaagctgaactgaaacga
gtgctcgaggactatactgcgcaggcattatcgttgcctggtgcaggacagccaggcgtc
ccattcaaatgtggatatttgccaattgctgtgcaaatgtag
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