Nymphaea colorata (blue-petal water lily): 116256146
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Entry
116256146 CDS
T07418
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
ncol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116256146
09124 Replication and repair
03420 Nucleotide excision repair
116256146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116256146
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116256146
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116256146
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116256146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
116256146
NCBI-ProteinID:
XP_031488241
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All DBs
Position
6:16589998..16601167
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AA seq
451 aa
AA seq
DB search
MPQVRIIAKNFMDLVAALPVFKLDKLYDSVFVCEAIMRSLPPLSKKYVLQMLYIDVGLTA
KLLEEWVLSDGLSKHKAAVDRLLQLRIFIETVDRKKETSYTLNEKFKGNLQKYIVNGEAM
PREPMPSSIVVRLPTLEELEAYALEQWENFLLQLIRLTKGEKSASFSSAIMKVVQRGLLS
SRDNDGLKLTENGFQFLLMDTNAQLWYIIREYISTSEDRGTDSTDLISFLLELSFHATGE
AYNMNTLTEVQEDAIKDLSQLGLVKLQQGRKESWFIPTKFVKNLAMSLSDSTSRKEGFIV
VETNFKLYANSSSKLHCEILDLFSRIEYQVPNLIVGSIAKESLYLAFSKGITAEQIITFL
QQNAHPRVATRIPTVPENVTDQIRLWEADRNRVEMIPSHLYDDFPSKEVFENACDFARET
GGLLWEDSQKMILILRGECHEEMRNYLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaggatcatcgcgaagaatttcatggatctggtggcagcgctgccagtc
ttcaagctcgacaagctctacgatagtgtcttcgtctgcgaagccattatgagatctctg
cctccattatccaagaagtatgttctgcaaatgttgtatattgatgttggcttaactgct
aaattattggaggaatgggtgctttcggatggtttgtctaagcataaagctgctgttgat
aggctactgcagctcagaatatttattgagactgtggacaggaaaaaggaaactagttac
acattgaatgagaagttcaaaggtaaccttcagaagtacatagtaaatggagaggctatg
ccacgagagccaatgccttcaagcatcgttgtgaggctcccaacgttggaggagctagag
gcttatgcccttgagcagtgggagaacttcctgcttcaacttattagattaaccaaggga
gaaaaatcggcaagttttagctctgcaattatgaaagttgtacaacgtggtcttctaagt
tcaagagacaatgatggcctaaagttaactgaaaatggctttcaatttttgctgatggac
accaacgcacagctttggtatatcattagggaatacatttctacctctgaggacagagga
acagattcaacagatttgatctcatttcttcttgagcttagttttcatgccactggtgag
gcatataatatgaacaccttgacagaggtgcaggaagatgctattaaagatctctctcag
cttggactggtcaaacttcagcagggaagaaaagagagctggtttattccgactaaattt
gtcaaaaatcttgccatgagtttgtcagattcaacatcacgcaaagagggttttatagtt
gtggaaacaaacttcaaattgtatgcaaattcatcgtcgaagcttcactgtgagatactg
gacctattctcaaggattgaatatcaagttccaaaccttattgttggatctattgctaag
gaaagtctgtaccttgcttttagtaaagggataacagcggagcagataataacttttctt
cagcagaacgctcatcctcgtgtagcaactagaatacctactgtgccagagaatgttacc
gatcagatcaggctgtgggaggctgatcgaaatcgagtagagatgattccgtcacatctt
tatgatgatttcccatcgaaggaggttttcgagaatgcgtgtgattttgcaagagaaact
ggtgggcttttgtgggaagattcccaaaagatgattctaattttgcgtggagaatgtcat
gaggagatgcgtaattatcttcgcaggcaaaggtag
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