Nymphaea colorata (blue-petal water lily): 116260460
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Entry
116260460 CDS
T07418
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
116260460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncol03000
]
116260460
Transcription factors [BR:
ncol03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
116260460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
116260460
NCBI-ProteinID:
XP_031494679
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All DBs
Position
9:21216414..21238778
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AA seq
719 aa
AA seq
DB search
MDTNSSGEDVIIRTRKPYTITKQRERWTAEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFSKLEREATVKGLPIGEAHEIKIPPPRPKRKPSNPYPRKMGVSAPTAKDCPV
SSACASKPSLLNINSPTKGYPESESSPPRKEYLKDSRSPEVLALFHEAPCASLTSESNID
KHTRGTSGLTSPGAFREFIPPKGESMNQMSQKLVQCGNAINLEIGNVMEVDSESLIIHSA
GKLGTETEVDEPEKDGGLDMLQKVDFPSSQSYPRHVPVHVVDINSAKLLEIQSPNVTSHG
NVPAEKEYHTNSTPALYPTYPILHPPFNPFQTNPEAFKSAAAYVSSTLSNFIMSSLLQNP
VAHAAANVAASCWPCMVDKEACPEETHETAASGISYAEPWPNLAAVAAATVTAASAWWAS
QGLIPFCHPNVSFPFVMTPATTAIPAMAGSPCPISDHKEEQKEQDLLEPELSQMIETACP
APESPPLSSDSDASAYGGSTDSKPKTASHEPRKLLPSDFHEVSKTEARKLQDNSSCGSNT
TSSSEVEMDIVHEDTKAAPKALDFINPSGDLTNRRFRNMGNTNESWKEVSEEGRLAFQAL
FSREVLPQSFSPRDDLQDKGQNNSNNETTAQDCEKQMESWSNSVIEGDKAIMIGGKSKNR
RTGFKPYKRCSVEAKEGMVVVDGIRGSEKGLKRIRVGGEANDMVIMSISGPAGEMHCSS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaattcttctggcgaagatgtcatcatacgaacgaggaagccatacaccatt
acgaagcagcgggagcgctggaccgcagaagagcataaccggtttctcgaagcactgaag
ctgtacggacgggcgtggcagcgtatcgaagagcatatcggaacaaaaacggcagttcaa
ataagaagccatgcccagaagttcttctcaaagttggaaagagaggccacagtcaagggt
ttaccaataggagaagctcatgaaataaaaattcctccacctcgccctaagagaaaacca
agcaatccataccctcgaaagatgggggtttctgcaccaactgccaaggattgtccagtt
tcttctgcgtgtgccagcaaaccttctctgttgaacatcaattctcctacaaagggatat
cctgagagtgaatcatctcctcctagaaaagaatatctcaaagatagtaggtctcctgaa
gtccttgctctcttccatgaagctccatgtgcttcgcttacttctgagagcaacattgac
aaacacactagaggaacttctggactcacaagtccaggtgcttttagggaatttatacca
ccaaaaggtgaatcgatgaaccaaatgtctcagaaactagtccagtgcgggaatgccatt
aacttggagattggaaatgttatggaagttgattcagaaagccttatcattcattctgct
ggaaagttgggcacagaaactgaagtagatgaaccagaaaaggatggggggcttgatatg
ttacaaaaagtggattttccctcctcgcagagttatcccaggcatgtgccagtgcatgtt
gttgacataaacagtgcaaaactattggaaattcaatcccctaatgtaacaagtcatggt
aatgtacctgcagaaaaggaatatcacacaaactcgacacctgcactttaccctacatac
cctatcttgcatcctcccttcaatccatttcagaccaacccagaagcatttaaatctgct
gcagcctatgtcagttctactttatcaaacttcatcatgtcgagccttctgcaaaatcct
gttgcacatgctgctgcaaatgtcgccgcttcatgttggccatgtatggtggacaaggaa
gcctgtccagaagaaactcatgaaacagctgccagtggaatatcttatgcagaaccttgg
ccaaatttggctgcagtggctgctgcaactgtaactgctgcttccgcatggtgggcttct
cagggtctaataccattttgccatcccaatgtaagctttccatttgttatgacccctgcc
acaactgctattcctgcaatggctgggtctccttgtcccatttctgatcacaaagaagaa
cagaaagaacaggaccttcttgaacctgaattgtcacaaatgattgaaactgcatgccct
gcaccagaatcaccacctttatcttctgattcagatgcaagcgcttatggcggttccaca
gattcaaaaccgaaaacggcatctcacgaaccaaggaagctcctcccttctgacttccac
gaagtgagtaagacagaagccaggaagctacaagataattcttcttgtggatccaacaca
acttcaagcagtgaggtggaaatggacatcgtgcatgaagatactaaggcagcacctaag
gcactggatttcatcaatccttctggagatcttacaaacagacgatttaggaatatggga
aacaccaatgaatcttggaaggaggtttctgaagagggacgtctagcgtttcaagcatta
ttttctagggaagtgttgccccagagcttctctcccagggacgatcttcaagacaaggga
caaaacaacagcaacaatgaaacaacagcacaggactgtgagaagcagatggagagttgg
agcaattctgtgattgagggagacaaagccatcatgattggaggcaagtcaaagaatcgt
cgaacgggtttcaagccttacaagaggtgctcagtggaggccaaggagggtatggtggtg
gtcgatggcatcagaggcagtgagaaagggttgaaaaggattcgcgttggaggggaagct
aacgatatggtcattatgtccatttcaggccctgcaggggagatgcattgctcatcctag
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integrated database retrieval system
