Nocardioides coralli: K6T13_03760
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Entry
K6T13_03760 CDS
T08149
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ncq
Nocardioides coralli
Pathway
ncq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6T13_03760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncq03400
]
K6T13_03760 (mfd)
Enzymes [BR:
ncq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6T13_03760 (mfd)
DNA repair and recombination proteins [BR:
ncq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K6T13_03760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
MEDS
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QZY30752
LinkDB
All DBs
Position
763703..767194
Genome browser
AA seq
1163 aa
AA seq
DB search
MTDAKGGAVAALDLTGPAGLRPFVVAGLLRQDRTVLAVTPTAREAEDLVAALGDVVDPDE
VAYYPSWETLPHERLSPRNDTVGRRLAVLRRLRHPGTAAGQGPLRVVVAPVRSLLQPQVA
GLGDLAPVELVAGDTVPLEDVVTRLAGAAYSRVDLVEKRGEFAVRGGIVDVFPPTEEHPL
RVEFWGDDVEEIRSFAVADQRTLEQVDRLWAPPCRELLLTEDVRRRAAALGEAHPQLVEL
TDKIAAGIAVEGMESLAPVLVDEMELLVDLLPVDTHVLVLDPERVRARAHDLVATSEEFL
GASWAAAAGGGQAPIDLGAASYRELGEVREHVLGREQAWWSVSPFGLGDEGVEVDADAVD
SRLLPAKAAELYRGDLERAITDVRGWLADQHRVVVVHPGHGPAERLVEVLADHDVPAALV
APEELEPRPGVVTVTTGTLDHGFVDPSLRLALLTGDDLSGQKTSTRDMRRMPARRKKQID
PLELTAGDYVVHEQHGVGRFVEMKQREVGGAVREYLVLEYGASKRGGPPDRLYVPADALD
QVTRYVGGEQPSLDRLGGADWTKRKNRARKAVREIAAELIKLYAARQATQGHAYGPDSPW
QRELEDAFPFQETPDQLSTVDEVKADMRRTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDG
KQVAVLVPTTLLVTQHLSTFAERMSGFPVTVKPLSRFQTDAEAREVIAGLAEGSVDIVVG
THRLLNPDIRVKDLGLIIVDEEQRFGVEHKEQMKRLRTSVDVLSMSATPIPRTLEMAVTG
IREMSTITTPPEERHPVLTYVGAYEDRQVTAAIRRELLREGQVFFIHNRVSSIEKAASRI
RELVPEARVATAHGQMGEHQLEQVMLDFWEKRFDVLVCTTIVESGLDVSNANTMIIERAD
TLGLSQLHQLRGRVGRSRERAYAYFLYPAEKPLTETAHERLATLAQHSDLGGGMAIAMKD
LEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVQEFKGEAEPELREVRIELPVEAHLPH
DFIPSERLRLEMYKRLAEVRADADVDVLLEEMQDRYGEPPEPVAALLLVARFRARARQAG
VGEVTVAGRNVRFAPVELPESRVVRLQRLYPKSIVKSQLGTVLVPRPGTPGATGRPLEGV
ALLEWARGVIDSVIDPQEQKEKS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcgaagggcggcgccgtcgccgcgctcgacctcaccggcccggccggcctg
cgcccgttcgtggtggccgggctgctgcgtcaggaccgcaccgtcctcgccgtcaccccg
acggcccgcgaggccgaggacctcgtggcggcactcggcgacgtcgtggaccccgacgag
gtcgcctactacccgagctgggagacgctgccgcacgagcggctgagcccccgcaacgac
accgtcggccggcggctggcggtgctgcgtcggctccgccacccgggcaccgccgccggg
cagggaccgctgcgggtcgtggtggccccggtgcggtcgctgctccagccgcaggtcgcc
gggctcggcgacctggcgccggtcgagctcgtcgcgggcgacaccgtgccgctggaggac
gtggtgacacggctcgccggcgcggcgtactcccgcgtcgacctcgtcgagaagcgcggc
gagttcgcggtccgcggtggcatcgtcgacgtcttcccgccgacggaggagcacccgctc
cgggtggagttctggggcgacgacgtcgaggagatccggagcttcgcggtcgccgaccag
cggaccctcgagcaggtcgaccggctctgggcaccgccgtgccgtgagctgctcctcacc
gaggacgtacgccgccgggcggccgcgctcggcgaggcgcacccgcagctggtcgagctg
accgacaagatcgccgccggcatcgccgtggagggcatggagtcgctggcgccggtgctg
gtggacgagatggagctgctcgtcgacctgctgccggtcgacacgcacgtcctcgtgctc
gacccggagcgggtccgggcccgtgcccacgacctggtcgccaccagcgaggagttcctc
ggcgccagctgggccgccgcggccgggggcgggcaggcaccgatcgacctgggcgctgcg
tcctaccgcgagctgggcgaggtccgggagcacgtgctgggccgtgagcaggcctggtgg
agcgtcagtcccttcgggctcggcgacgagggcgtcgaggtcgacgccgacgcggtcgac
tcacggctgctgccggcgaaggcggccgagctctaccgcggcgacctcgagcgcgccatc
accgacgtccgcggctggctggcagaccagcaccgcgtggtggtcgtccaccccggccac
ggtccggccgagcggctggtcgaggtgctcgccgaccacgacgtgcccgccgccctggtg
gcaccggaggagctggagcctcggccgggcgtcgtgacggtgaccaccggcacgctcgac
cacggtttcgtcgacccgtcgctgcggctggccctgctcaccggcgacgacctgtccggg
cagaagacctccacccgcgacatgcgccggatgccggcccggcggaagaagcagatcgac
ccgctggagctgacggcgggggactacgtggtgcacgagcagcacggcgtcggccggttc
gtcgagatgaagcagcgcgaggtcggcggggccgtccgggagtacctcgtgctcgagtac
ggcgcctcgaagcgcggtggcccgccggaccggctctacgtgccggccgacgcgctcgac
caggtgacgcggtacgtcggcggcgagcagcccagtctcgaccggctcggcggcgcggac
tggacgaagcggaagaaccgggcacgcaaggcggtgcgcgagatcgcggccgagctgatc
aagctctacgccgcgcggcaggcgacgcaggggcacgcctacggccccgacagtccctgg
cagcgcgagctcgaggacgccttcccgttccaggagacccccgaccagctgagcacggtc
gacgaggtcaaggccgacatgcggcgcacggtgccgatggaccggctggtgtgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgggcggccttcaaggccgtgcaggacggc
aagcaggtggcggtcctggtgccgaccacgctgctggtcacccagcacctctccaccttc
gccgagcggatgagcgggttcccggtcaccgtgaagccactgtcgcggttccagaccgac
gccgaggcgcgggaggtcatcgcgggtctggccgagggctccgtcgacatcgtggtcggc
acccaccggctgctcaaccccgacatccgcgtcaaggacctggggctgatcatcgtcgac
gaggagcagcggttcggcgtggagcacaaggagcagatgaagcggctccggacctcggtc
gacgtgctgtccatgagtgccaccccgatcccgcggacgctcgagatggccgtgaccggg
atccgggagatgtcgaccatcaccaccccgccggaggagaggcacccggtgctcacctac
gtcggcgcctacgaggaccgccaggtcacggccgccatccgccgcgagctgctccgcgag
ggccaggtgttcttcatccacaaccgggtcagctcgatcgagaaggccgcctcgcggatc
cgcgagctggtcccggaggcccgtgtcgcgacggcccacggacagatgggcgagcaccag
ctcgagcaggtgatgctcgacttctgggagaagcgcttcgacgtcctggtctgcacgacc
atcgtcgagtcggggctcgacgtctccaacgccaacaccatgatcatcgagcgggccgac
accctcggactctcccagctccaccagctgcgcggccgggtcggtcgcagccgggagcgc
gcctacgcctacttcctctacccggccgagaagccgctcaccgagaccgcgcacgaacga
ctggccaccctggcccagcactccgacctcggtggcggcatggcgatcgcgatgaaggac
ctcgagatccggggcgccggcaacctgctcggtggggagcagtcggggcacatcgccgac
gtcggcttcgacctctacgtccggctggtcggcgaggccgtgcaggagttcaagggcgag
gcggagcccgagctgcgcgaggtgcggatcgagctgcccgtggaggcccacctgccacac
gacttcatcccgagcgagcggttgcgcctggagatgtacaagcggctggccgaggtccgc
gccgacgccgacgtcgacgtgctgctcgaggagatgcaggaccggtacggcgagccgccg
gagccggtcgcggcgctgctgctggtggctcgcttccgtgcccgcgcgcgtcaggccggg
gtcggcgaggtcacggtcgccggccgcaacgtgcggttcgccccggtggagctgccggag
tcgcgcgtggtccggctgcagcggctctacccgaagagcatcgtcaagagccagctcggc
acggtcctggtgccccggccggggaccccgggggcgacgggccgtccgctggagggagtg
gccctgcttgaatgggcccgcggcgtgatcgactccgtgatcgacccgcaggagcagaag
gagaagtcgtga
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