Neurospora crassa: NCU01831
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Entry
NCU01831 CDS
T01034
Name
(RefSeq) RNA polymerase TFIIH complex subunit Ssl1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ncr
Neurospora crassa
Pathway
ncr03022
Basal transcription factors
ncr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NCU01831
09124 Replication and repair
03420 Nucleotide excision repair
NCU01831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncr03021
]
NCU01831
03400 DNA repair and recombination proteins [BR:
ncr03400
]
NCU01831
Transcription machinery [BR:
ncr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NCU01831
DNA repair and recombination proteins [BR:
ncr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NCU01831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
3872762
NCBI-ProteinID:
XP_956615
UniProt:
Q1K578
LinkDB
All DBs
Position
II:2259896..2262383
Genome browser
AA seq
469 aa
AA seq
DB search
MADSDGEYASDDELKRHGKRTADGRSKQTKASWEDVKRSWDTVLETADSGLSIAEIREAE
KRRRLLRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPI
SQLGIVGMRDGIAVRISDLSGNPAEHIEKLMQWSEQQDPQGNPSLQNALQMCRGALYQTP
SHATREILIIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICSELCKRTNNHDG
NYSVAVDEVHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSFCACHAKPT
REGYTCPRCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEVPWSQAYKSTAC
YSCLTPFPARPRDSVAAAPAVLGGRAGAKGSGKQQDGEQKNPKPELKGVSESGRYACQVC
GNHFCIDCDVFAHETIHNCPGCQSDTRDVEKDTAVAVPDGGPTPMVMDS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggctgactcggacggcgagtacgcctccgacgatgagctcaagaggcatggaaagagg
acagcggacgggcgcagcaagcaaaccaaggcgtcatgggaagatgttaagcgctcctgg
gataccgtcttggaaacagcggacagcggcctctccatcgcagagattcgggaggccgag
aagcggcgtcgccttctgcgcgacacgacacctcttcagcgtggaattatccgccatctg
atgcttgtgctcgacatgagtttcgccatggccgacaaagatctgctaccaaaccgttac
cgagtcgtcctaaataacgccattggcttcgtacgcgagtatttcgagcagaatcccatc
agtcagctaggcatcgtgggaatgcgcgatggaattgctgtgcgaataagcgacctgagc
gggaatccggccgagcacatcgaaaagttgatgcaatggagcgagcaacaagacccccaa
ggaaatccgagtttacagaatgcacttcaaatgtgccgaggtgctctatatcaaacgccg
tcacatgccacgcgcgaaatactgataatctacggtgccctcgtctcaatcgatccgggc
gacatacacgacaccatcaacgacctcgtagccgaccgcatccgcgtctcggtcgttggc
ctcgccggccaagtcgccatctgcagcgagctttgcaagcggacgaacaaccacgacggc
aactacagcgtcgccgtagacgaggtgcacctcaaggagctcttcttcgccgccaccact
ccgcccgtcacccgcacgcccgagcaaaacaccgccagcctgctcatgatgggctttccc
agccgcacgcttgctccgaaagaccatgtcagcttctgcgcctgccacgcgaagcccacg
cgcgaggggtacacctgtccgcgctgcggaatcaaagtgtgccggctgccgatcgactgt
ccgatctgcaagctgacgctcatccagagcacgcacttggcgaggtcgtaccatcatctg
ttcccgctcaaggtgtttgtggaggttccgtggtctcaggcgtataagtcgacggcgtgc
tactcgtgcctgacaccctttcctgctaggccaagggattcagtggcggcagcgccagct
gtgttaggagggagagccggagctaaaggtagcgggaaacaacaggacggcgagcagaaa
aatccaaaaccggaactcaagggtgtcagcgaaagcgggcggtatgcttgccaggtatgc
ggaaatcatttttgcatagactgtgatgtctttgcccacgagactattcataattgtcct
gggtgtcagagcgatacgagggatgtggagaaggatacggcagtagcagtaccagacggt
ggccctacacccatggtgatggattcctag
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