Neptunomonas concharum: F0U83_06255
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Entry
F0U83_06255 CDS
T06194
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ncu
Neptunomonas concharum
Pathway
ncu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0U83_06255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncu03019
]
F0U83_06255
03009 Ribosome biogenesis [BR:
ncu03009
]
F0U83_06255
Enzymes [BR:
ncu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0U83_06255
Messenger RNA biogenesis [BR:
ncu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0U83_06255
Ribosome biogenesis [BR:
ncu03009
]
Prokaryotic type
rRNA helicases
F0U83_06255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
PAH
Motif
Other DBs
NCBI-ProteinID:
QEQ96342
UniProt:
A0A5P1RAM9
LinkDB
All DBs
Position
complement(1340470..1342197)
Genome browser
AA seq
575 aa
AA seq
DB search
MSLDDQPAFSELGLAAPLLQVLQEIGYETPSPIQAASIPHLLEGRDLLGQAQTGTGKTAA
FALPLMSRIDIKKTTPQLLVLAPTRELAIQVAEAFQTYARHIKNFHVLPIYGGQAYDGQL
RQLRRGVHVIVGTPGRVMDHIRRGSLVLDDLQALVLDEADEMLRMGFIDDVDWILEHTPA
TRQIALFSATMPSAIRRLALQHLKNPEEIKIASKTATATTIKQRYWRVSGLHKLDALTRI
LEMQQFDAMLVFVRTKSATIELAEKLTARGYACEALNGDVSQQLRERTVERLKQGKLDIL
VATDVVARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGREGEAILFVSPREQRMLRM
IEQATRQKIEPMDLPSAADINTKRIDRFKQQISDVLDNKDISQFLDLLTEYQHEHDTDPM
HIAAALAALLQGQTPLLINEKEIRSPKGFEDRPPREKGERPARKRREGPESDIEMQRYCL
SVGREHGVKPGNIVGAIANEADIESRYIGHIDIREKATFVDLPAGLPKEVEALLQKAMVC
GQRLSIKKVDGASKPSRSSRPSNKGPRTKKPRKKD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtcactagacgaccagcccgctttttcagaattgggcttggccgctcctttgttgcaa
gtgcttcaagagatcggctacgaaacaccttcgccaattcaggctgccagtattccacac
cttttggaaggtagagacctgctaggacaagcacagacaggtaccggaaaaacggctgca
tttgcattaccattaatgtcacgtatcgacattaaaaaaacgacgccacaactactcgtg
ctagcaccgacacgagaattggctattcaagtcgcggaagcctttcaaacttatgcccgt
catatcaaaaactttcatgtactgcctatttatggcggtcaggcatatgacggacagtta
agacaattgcgtcgtggtgtacatgttattgttggcacaccgggtcgcgttatggatcac
atccgtcgcggttccctagttctggacgacctgcaggcattagtactggatgaagccgac
gaaatgctacgcatgggcttcattgacgacgttgactggattttagagcacacacctgca
acacgacaaattgcattattttcggcaacaatgccatcagctattcgccgccttgcccta
cagcatcttaaaaaccctgaagaaattaagattgccagcaagactgcaacagccacgact
atcaagcaacgctactggcgcgttagcggtctccacaagttggatgctctgactcgtatt
ttagagatgcaacagttcgacgccatgcttgtttttgttcgtacgaaatcagcaactatc
gaactggccgaaaagctgacagcacgaggctacgcttgtgaagcacttaacggcgatgta
tctcagcaacttcgagagcgtacggttgaacgactgaagcaaggaaaactcgatatccta
gtggctactgatgtcgttgcccgaggattagatgttgaacgtatcagccatgtcttaaac
tacgacataccatatgatactgagtcctatgtccaccgtatcggtcgaacaggccgtgct
ggccgtgaaggggaagctatccttttcgtgtcgcctcgtgaacagcgcatgttgcgcatg
atcgaacaagcgacgcgccaaaaaattgaaccaatggatcttccatctgccgctgatatc
aatacaaaacgtattgatcgcttcaaacaacaaatcagcgatgttttggataataaagat
atctctcagttcttagaccttttaactgagtatcaacatgaacacgatactgacccgatg
cacattgcagcagcacttgccgcattattgcaaggccagacgccattgctgatcaatgag
aaagagattcgaagccctaaaggttttgaagatcgccctcctcgcgaaaaaggcgaacgt
ccagcacgtaagcgtcgagagggccctgaatctgatattgaaatgcaacgctattgcctg
tcagtaggccgtgaacacggtgttaaaccaggtaacatagtgggggcgattgcaaatgag
gctgatatcgaaagtcgctatattggtcatatcgacattcgagaaaaagcaacctttgta
gatcttcctgcaggacttcctaaagaggttgaagccctactccagaaagcgatggtctgt
ggccaacgactgagcatcaagaaagtcgatggcgcatctaaaccgtctcgaagtagtcgc
ccatccaataaggggcctcgcactaagaagccgcgcaaaaaggattga
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