KEGG   Candidatus Nitrosocaldus cavascurensis: NCAV_0398
Entry
NCAV_0398         CDS       T05329                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ncv  Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03030  DNA replication
ncv03410  Base excision repair
ncv03420  Nucleotide excision repair
ncv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NCAV_0398 (lig)
   03410 Base excision repair
    NCAV_0398 (lig)
   03420 Nucleotide excision repair
    NCAV_0398 (lig)
   03430 Mismatch repair
    NCAV_0398 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncv03032]
    NCAV_0398 (lig)
   03400 DNA repair and recombination proteins [BR:ncv03400]
    NCAV_0398 (lig)
Enzymes [BR:ncv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NCAV_0398 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     NCAV_0398 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NCAV_0398 (lig)
DNA replication proteins [BR:ncv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NCAV_0398 (lig)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NCAV_0398 (lig)
DNA repair and recombination proteins [BR:ncv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NCAV_0398 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     NCAV_0398 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     NCAV_0398 (lig)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: SPC33592
UniProt: A0A2K5APM2
LinkDB
Position
NCAV:complement(359072..360880)
AA seq 602 aa
MDYSIVVDVFNEMEATSKRTELTDLIVRLLKSTPKELIDKVVYLMLGRLKPEYEGIELGI
ADKMALRALSISSGIDMKKVEEMYVRRGDIGEAAEEALSKRLQSVLFKDRLTVERVYSTL
EKVAMLKGEGSQDVKIRYLCNLLNDAEPREGKYILKMVTAKLRLGIADYTLLDALAIAFT
ESKENREVLERAYNLTSDLGLVARVLVYGGLDAVKAIRMELFRPIRPMLAERVSSAEEAL
GRMGGRCAAEYKLDGERLQIHKHDDTVKIFSRRLEDITNHYPDAVDAIAGIRRARDLIVE
GEAVAINQDTQEYLPFQELMHRRRKYGIEEAMKEYPITLNLFDILYIDGKECIDLPYMER
RRILEDLISDVESSNSSSMVSIVPMLMVSDAKSIEDYMFKAINEGCEGLMLKDLNSPYRA
GARGYAWIKLKREYRSELADTLDLVVVGAFHGRGRRTGRYGALLLASYNREDDTFYTVCK
VGTGFTDEDLERFHTMLSPYILKHRHVRVNSRLDADVWFEPKIVIEVIASEITLSPLHTC
ALNVIREGNGLALRFPKFTGRIRDDKNAEDATSVDEIVSMYRRQLKVTRQVQSNEGSADR
IE
NT seq 1809 nt   +upstreamnt  +downstreamnt
atggactactctatagtggtagatgtattcaacgagatggaggctacaagcaagagaaca
gaacttaccgatctcatcgttagattactcaagagcactccaaaagaactcatagacaag
gttgtatacctcatgcttggaaggctaaagccagagtatgagggtatagaacttggtata
gcggataagatggcccttagagcactatccatatcctctggcattgatatgaagaaggtt
gaggagatgtatgtaaggagaggggatataggcgaggctgctgaggaggcattgagcaag
aggcttcaatcagtactcttcaaggataggctaactgtagagagggtttactctacacta
gagaaggttgcaatgctcaaaggcgaaggctctcaagatgtaaagataaggtatctatgc
aacctacttaacgatgctgagcctagagagggtaagtacatacttaagatggttactgct
aagttaaggctgggtatagcagattatacactgcttgatgcactagcaatagcattcaca
gagagcaaggagaatagagaggttcttgagagggcctataaccttacaagtgatcttggg
ttggtagcaagggtgctagtgtatggagggcttgatgctgtaaaggcgataaggatggaa
ctcttcaggcctataagaccaatgttggctgagagggtctcaagcgctgaagaagcactt
gggaggatgggggggaggtgtgctgcagagtacaagcttgatggcgagaggcttcagata
cacaagcatgatgatacagttaagatcttctctaggaggcttgaggatataaccaatcat
taccctgatgctgtagatgctatagcaggtataagaagagcaagagacctcatagttgaa
ggggaggcagttgcaataaatcaggatacccaggagtatctacctttccaggagttgatg
cataggcgcaggaagtatggtatagaggaggctatgaaggagtatcctataaccttgaac
ctattcgatatcctctacatagatggtaaggagtgcatagatcttccatacatggagagg
aggaggatacttgaggatcttatctctgatgtagagagtagcaatagtagtagtatggta
agtatagttcctatgcttatggtaagtgatgcaaagagcatagaggattacatgtttaag
gcaataaatgaagggtgcgaggggctaatgctcaaggatcttaacagcccatacagggct
ggtgcaaggggctatgcatggatcaagttgaagagggagtataggagtgagttggcagat
accctagaccttgttgtcgttggtgcattccatggtagaggtaggaggactggaaggtat
ggtgcactgctcctagcatcatacaacagggaggatgatacattctatacagtatgcaag
gttggtacagggttcacagatgaggatctggagaggttccatactatgctcagcccatac
atactcaagcatagacatgttagggtaaactcaaggcttgatgctgatgtatggttcgaa
cccaagatagttatagaggttatagcatctgagataacgctcagcccattgcatacatgt
gcactgaacgttataagggagggtaatggcctagcgttgaggttcccaaagttcactgga
aggataagggatgataagaatgctgaagatgctacaagtgttgatgagatagtatctatg
tataggaggcagttgaaggttacaaggcaggttcagagtaatgaagggagtgcagatagg
atagagtga

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