Candidatus Nitrosocaldus cavascurensis: NCAV_0398
Help
Entry
NCAV_0398 CDS
T05329
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03030
DNA replication
ncv03410
Base excision repair
ncv03420
Nucleotide excision repair
ncv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCAV_0398 (lig)
03410 Base excision repair
NCAV_0398 (lig)
03420 Nucleotide excision repair
NCAV_0398 (lig)
03430 Mismatch repair
NCAV_0398 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncv03032
]
NCAV_0398 (lig)
03400 DNA repair and recombination proteins [BR:
ncv03400
]
NCAV_0398 (lig)
Enzymes [BR:
ncv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCAV_0398 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
NCAV_0398 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
NCAV_0398 (lig)
DNA replication proteins [BR:
ncv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NCAV_0398 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
NCAV_0398 (lig)
DNA repair and recombination proteins [BR:
ncv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NCAV_0398 (lig)
NER (nucleotide excision repair)
Other NER factors
NCAV_0398 (lig)
MMR (mismatch excision repair)
Other MMR factors
NCAV_0398 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
SPC33592
UniProt:
A0A2K5APM2
LinkDB
All DBs
Position
NCAV:complement(359072..360880)
Genome browser
AA seq
602 aa
AA seq
DB search
MDYSIVVDVFNEMEATSKRTELTDLIVRLLKSTPKELIDKVVYLMLGRLKPEYEGIELGI
ADKMALRALSISSGIDMKKVEEMYVRRGDIGEAAEEALSKRLQSVLFKDRLTVERVYSTL
EKVAMLKGEGSQDVKIRYLCNLLNDAEPREGKYILKMVTAKLRLGIADYTLLDALAIAFT
ESKENREVLERAYNLTSDLGLVARVLVYGGLDAVKAIRMELFRPIRPMLAERVSSAEEAL
GRMGGRCAAEYKLDGERLQIHKHDDTVKIFSRRLEDITNHYPDAVDAIAGIRRARDLIVE
GEAVAINQDTQEYLPFQELMHRRRKYGIEEAMKEYPITLNLFDILYIDGKECIDLPYMER
RRILEDLISDVESSNSSSMVSIVPMLMVSDAKSIEDYMFKAINEGCEGLMLKDLNSPYRA
GARGYAWIKLKREYRSELADTLDLVVVGAFHGRGRRTGRYGALLLASYNREDDTFYTVCK
VGTGFTDEDLERFHTMLSPYILKHRHVRVNSRLDADVWFEPKIVIEVIASEITLSPLHTC
ALNVIREGNGLALRFPKFTGRIRDDKNAEDATSVDEIVSMYRRQLKVTRQVQSNEGSADR
IE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggactactctatagtggtagatgtattcaacgagatggaggctacaagcaagagaaca
gaacttaccgatctcatcgttagattactcaagagcactccaaaagaactcatagacaag
gttgtatacctcatgcttggaaggctaaagccagagtatgagggtatagaacttggtata
gcggataagatggcccttagagcactatccatatcctctggcattgatatgaagaaggtt
gaggagatgtatgtaaggagaggggatataggcgaggctgctgaggaggcattgagcaag
aggcttcaatcagtactcttcaaggataggctaactgtagagagggtttactctacacta
gagaaggttgcaatgctcaaaggcgaaggctctcaagatgtaaagataaggtatctatgc
aacctacttaacgatgctgagcctagagagggtaagtacatacttaagatggttactgct
aagttaaggctgggtatagcagattatacactgcttgatgcactagcaatagcattcaca
gagagcaaggagaatagagaggttcttgagagggcctataaccttacaagtgatcttggg
ttggtagcaagggtgctagtgtatggagggcttgatgctgtaaaggcgataaggatggaa
ctcttcaggcctataagaccaatgttggctgagagggtctcaagcgctgaagaagcactt
gggaggatgggggggaggtgtgctgcagagtacaagcttgatggcgagaggcttcagata
cacaagcatgatgatacagttaagatcttctctaggaggcttgaggatataaccaatcat
taccctgatgctgtagatgctatagcaggtataagaagagcaagagacctcatagttgaa
ggggaggcagttgcaataaatcaggatacccaggagtatctacctttccaggagttgatg
cataggcgcaggaagtatggtatagaggaggctatgaaggagtatcctataaccttgaac
ctattcgatatcctctacatagatggtaaggagtgcatagatcttccatacatggagagg
aggaggatacttgaggatcttatctctgatgtagagagtagcaatagtagtagtatggta
agtatagttcctatgcttatggtaagtgatgcaaagagcatagaggattacatgtttaag
gcaataaatgaagggtgcgaggggctaatgctcaaggatcttaacagcccatacagggct
ggtgcaaggggctatgcatggatcaagttgaagagggagtataggagtgagttggcagat
accctagaccttgttgtcgttggtgcattccatggtagaggtaggaggactggaaggtat
ggtgcactgctcctagcatcatacaacagggaggatgatacattctatacagtatgcaag
gttggtacagggttcacagatgaggatctggagaggttccatactatgctcagcccatac
atactcaagcatagacatgttagggtaaactcaaggcttgatgctgatgtatggttcgaa
cccaagatagttatagaggttatagcatctgagataacgctcagcccattgcatacatgt
gcactgaacgttataagggagggtaatggcctagcgttgaggttcccaaagttcactgga
aggataagggatgataagaatgctgaagatgctacaagtgttgatgagatagtatctatg
tataggaggcagttgaaggttacaaggcaggttcagagtaatgaagggagtgcagatagg
atagagtga
DBGET
integrated database retrieval system