Nonomuraea coxensis: Nocox_37455
Help
Entry
Nocox_37455 CDS
T07466
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ncx
Nonomuraea coxensis
Pathway
ncx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Nocox_37455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncx03400
]
Nocox_37455 (mfd)
Enzymes [BR:
ncx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nocox_37455 (mfd)
DNA repair and recombination proteins [BR:
ncx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Nocox_37455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYC45044
LinkDB
All DBs
Position
complement(8007346..8010882)
Genome browser
AA seq
1178 aa
AA seq
DB search
MAGGDRDAVVGLWAYLMSLSGLLDLVRADPKLTAALEEGGDVALIAPSALRPFGVAALAA
HDQRTVLAVTATGREAEDLAAALTSLVEPASVAVFPAWETLPHERLSPRSDTVGQRLAVL
RRLAHPVKGDSAAGPLSVIVTPVRALLQPIVKGLGDLEPIRLRAGDDADLDEVVAQLVGN
GYHRVDMVERRGEVAVRGGLLDVFPPTEEHPLRLEFWGDTVEEIRWFKVADQRSLEAAED
GLFAPPCRELLLTDDVRRRARELAERHPALAEVLDQLAEGSPVEGMEAFAPALAGEMDLL
LDHLPVRSAVFVCDPERIRGRAEELVRTSQEFLEASWINAAAGGEAPIDLDAAAFRTLEE
IRQHADVLGQPWWTMAPFGNGVELDAHDSEAYRGDTAKALADIKGWLAEEKAVVLLSEGH
GPAERMVELLKGVDVPARLRPYLDKAPEPKVVHVSTGLIEHGFVTPSLAVLTHLDLVGQK
ASTKDMRRLPSRRRNMVDPLQLKLGDHVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAK
GDRLYVPTDQLDEVTRYVGGEAPTLNRMGGADWAKAKSRAKKAVKEIAGELIRLYSARMA
SPGHAFGGDTPWQREMEDAFPYAETGDQLAAIDEVKRDMERGVPMDRLICGDVGYGKTEI
AVRAAFKAVQDGKQVAVLVPTTLLVQQHMSTFAERFSSFPVTVKPISRFQTDGEVKATLD
GLRTGAVDVVIGTHRLLSPEVRFKDLGLIIIDEEQRFGVEHKEAMKHLRTQVDVLAMSAT
PIPRTLEMGLTGIREMSTILTPPEERHPILTFVGPYEEKQIAAAVRRELMRDGQVFFVHN
RVASINRVATRLRELVPEARVAVAHGQMNENQLEKIMVGFWEREYDVLVSTTIVESGLDV
PNANTLIVDRADNYGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATISQHT
EMGAGMYVAMKDLEIRGAGNVLGAEQSGFIAGVGFDLYVRLMAEAVQEQKAKLDGGEARE
ETPDVKVELPINAHIPHDYVTSERLRLEAYKRIAGIAEESHIAEVRDELTDRYGKPPVEV
GNLLEVAAFRIKARRAGLTDVTLQGQNIKFGPARLRESQQVRLDRLYKKAVYKQAAETLL
VPIPKTKPLGGQPLRDLDLLKWCGDLVEALFLEPARVS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggccgggggtgatcgtgatgccgtcgtggggctgtgggcgtatctgatgagtctttcc
ggactgcttgaccttgttcgcgccgacccgaagctgaccgccgcccttgaggagggcggc
gacgtcgcgctgatcgcgccgtccgcgcttcggccgttcggcgtggccgcgctcgccgcg
cacgaccagcggaccgtgctcgcggtcacggcgaccggccgcgaggccgaggacctcgcc
gccgcgctgaccagccttgtcgagcccgcctccgtggcggtcttcccggcctgggagacc
ctgccgcacgagcgcctgtcgccgcgcagcgacaccgtggggcagcggctggccgtgctg
cgccggctcgcccacccggtcaagggcgactccgccgccgggccgctcagcgtgatcgtc
accccggtccgcgcgctgctgcagcccatcgtcaagggactcggcgacctggagccgatc
cggctgcgcgccggcgacgacgccgacctcgacgaggtcgtggcccagctcgtcggcaac
ggctaccaccgggtcgacatggtggagcggcgcggcgaggtggccgtgcgcggcggcctg
ctcgacgtcttcccgcccaccgaggagcatccgctgcggctggagttctggggtgacacc
gtcgaggagatccgctggttcaaggtggccgaccagcgctcgctggaggcggccgaggac
ggcctgttcgcgccgccctgccgcgagctgctgctgaccgacgacgtacgccgccgcgcc
cgcgagctggccgagcggcacccggcgctcgccgaggtgctcgaccagctcgccgagggc
tccccggtggagggcatggaggcgttcgcgccggcgctggcgggggagatggacctgctg
ctcgaccacctgccggtgcgttctgcggtgttcgtgtgcgaccccgagcggatcaggggc
cgggccgaggagctcgtccgcacctcgcaggagttcctggaggcgtcctggatcaacgcc
gcggccggcggcgaggcgcccatcgacctcgacgcggccgcgttccgcacgctggaggag
atccggcagcacgccgacgtgctcgggcagccgtggtggacgatggccccgttcggcaac
ggcgtggagctggacgcccacgacagcgaggcctaccgcggcgacaccgccaaggcgctg
gccgacatcaagggctggctggcggaggagaaggcggtcgtgctgctcagcgagggccac
ggcccggccgagcgcatggtcgagctgctcaagggcgtggacgtgcccgcccggctgcgc
ccctacctcgacaaggcgcccgagcccaaggtcgtgcacgtcagcaccggcctgatcgag
cacggcttcgtcacgccgtcgctggccgtgctcacccacctcgacctggtcggccagaag
gcgtccaccaaggacatgcgccggctgccctcgcgccgccgcaacatggtggacccgctg
cagctcaagctcggcgaccacgtcgtgcacgagcagcacggcgtcggccgctacgtcgag
atggtgcagcgcacggtccagggcgcgacccgcgaatacctcgtcatcgagtacgccaag
ggcgaccgcctctacgtccccaccgaccagctcgacgaggtcacccgctacgtcggcggc
gaggcgcccacgctcaaccgcatgggcggcgccgactgggccaaggccaagtcgcgggcg
aagaaggcggtcaaggagatcgccggcgagctgatcaggctctactccgcccgcatggcc
tcgccaggccacgccttcggcggcgacacgccctggcagcgcgagatggaggacgccttc
ccctacgccgagaccggcgaccagctcgccgccatcgacgaggtcaagcgcgacatggag
cgcggcgtcccgatggaccggctgatctgcggcgacgtcggctacggcaagaccgagatc
gcggtgcgggcggcgttcaaggcggtccaggacggcaagcaggtggcggtgctggtgccg
accacgctgctggtgcagcagcacatgtccaccttcgccgagcggttctccagctttccc
gtcacggtcaagccgatctcccgcttccagaccgacggcgaggtcaaggccaccctcgac
ggcctgcggacgggcgcggtcgacgtcgtgatcggcacccaccggctgctcagccccgag
gtgcgcttcaaggacctcggcctcatcatcatcgacgaggagcagcgcttcggcgtcgag
cacaaggaggcgatgaagcacctgcgcacgcaggtggacgtgctcgccatgtcggccacg
ccgatcccgcgcacgctggagatgggcctgaccggcatccgtgagatgtcgaccatcctc
acgccgccggaggagcggcacccgatcctcacgttcgtggggccgtacgaggagaagcag
atcgccgccgcggtgcggcgcgagctgatgcgcgacggccaggtgttcttcgtccacaac
cgggtcgcctcgatcaaccgggtggcgacgcggctgcgcgagctggtgcccgaggcgcgc
gtcgcggtcgcccacggccagatgaacgagaaccagctcgaaaagatcatggtgggcttc
tgggaacgcgagtacgacgtgctcgtctccaccacgatcgtcgagtccggcctcgacgtg
cccaacgccaacaccctcatcgtcgaccgggcggacaactacggcctgtctcagctccac
cagctccgcggccgggtcgggcggggccgcgagcgcggctacgcctacttcctctatccg
ccggagaagccgctcaccgagaccgcgcacgagcgcctggccaccatctcgcagcacacg
gagatgggcgccggcatgtacgtcgccatgaaggacctggagatccgcggcgcgggcaac
gtgctgggcgccgagcagtccggtttcatcgccggcgtcggcttcgacctctatgtccgc
ctgatggccgaggccgtgcaggagcagaaggccaagctcgacggcggcgaggcgcgcgag
gagacgccggacgtcaaggtcgagctgccgatcaacgcccacatcccgcacgactacgtc
acctccgagcggctgcggctggaggcgtacaaacggatcgccggcatcgccgaggagagc
cacatcgccgaggtgcgcgacgagctgaccgaccgctacggcaagccgccggtggaggtg
ggcaacctcctggaggtcgccgcgttccggatcaaggcgcgcagggcgggcctcaccgac
gtcacgctgcagggccagaacatcaagttcggcccggcgaggctgcgcgagtcgcagcag
gtccggctcgaccggctctacaagaaggccgtctacaagcaggccgcggagacgctgctg
gtgccgatcccgaagacgaagccgctcggcgggcagcctctgcgcgacctcgacctgctc
aaatggtgcggggacctggtcgaggcgctgttccttgagcccgcacgggtaagctag
DBGET
integrated database retrieval system
