Nitrospira defluvii: NIDE4043
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Entry
NIDE4043 CDS
T01281
Symbol
rfbC
Name
(GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K01790
dTDP-4-dehydrorhamnose 3,5-epimerase [EC:
5.1.3.13
]
Organism
nde
Nitrospira defluvii
Pathway
nde00521
Streptomycin biosynthesis
nde00523
Polyketide sugar unit biosynthesis
nde00541
O-Antigen nucleotide sugar biosynthesis
nde01100
Metabolic pathways
nde01110
Biosynthesis of secondary metabolites
nde01250
Biosynthesis of nucleotide sugars
Module
nde_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
NIDE4043 (rfbC)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
NIDE4043 (rfbC)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
NIDE4043 (rfbC)
Enzymes [BR:
nde01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
NIDE4043 (rfbC)
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Motif
Pfam:
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
CBK43712
UniProt:
D8P880
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Position
complement(4001114..4001671)
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AA seq
185 aa
AA seq
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MQITPTPLKGLFQIEPDVFGDARGKFVEIFRESRYDAAGIDKPFVQDNFSWSVRGTLRGL
HYQLARPQGKLVMVVKGTVFDVAVDIRQGSPTFGQWYGVELSDSNMRQLYIPPGFAHGFC
VLSEDAGFLYKCTDVYSPPDERGILWNDPALAIAWPVKTPLLSAKDQAYKCLADMRTELP
RYESR
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgcagattacgcccacgccgcttaagggcctgtttcagatcgagcctgatgtattcggc
gatgcccggggaaaattcgtcgagatctttcgcgagtcacgctacgatgcggccggaatc
gacaaaccatttgtacaggacaatttttcctggtccgttcgaggcactctgcgcggactc
cactatcagctagctcgaccacaggggaaattggtcatggtcgtcaagggtacggtgttc
gatgtggcggtcgatatccggcaggggtcgccgacgttcgggcaatggtacggagtggag
ctatccgacagcaacatgcggcaattgtatattcctcccggttttgcccatggcttttgt
gtgctcagcgaggacgcagggtttctgtataagtgtacggatgtctattccccgccggat
gagcggggcatcctatggaatgatccggctctcgccattgcctggcctgtaaagaccccg
ctgctgtcggcgaaagatcaagcatataagtgcctggctgacatgaggacggagttgccc
cgttacgaaagccgctag
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