Nocardioides dokdonensis: I601_2209
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Entry
I601_2209 CDS
T04431
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I601_2209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_2209
Enzymes [BR:
ndk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I601_2209
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I601_2209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANH38634
UniProt:
A0A1A9GK40
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All DBs
Position
2299713..2300621
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AA seq
302 aa
AA seq
DB search
MAGEEVHVDVEGRTLRLTNLDKVLYPATGTTKGEVLHYYAQIAPTLLPHLADRAVTRIRW
PHGVGGSSFFEKNAPSGTPSWVRTVSVPTTGSRGESRHGDRLVFPVVDDLATLTWLANLA
ALELHVHQWRVGRNGRPRNPDRIVIDLDPGDPAGLHECCQVALLVRDRLAGRGLVARPVT
SGSKGLHLYATLPQRLAADAATELAKEVADELSAARPRHVTATMTKARRGGKVFLDWSQN
AASKTTITPYSLRGRERPYVAAPVSWAEVEAGAEDPLGLEQLRFEEVLERVADLGDLFAK
PT
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggaggaggtgcacgtcgacgtcgagggccgcaccctgcgcctgaccaacctc
gacaaggtgctctacccggccaccggcaccacgaagggcgaggtgctgcactactacgcc
cagatcgccccgacgctgctgccgcacctcgccgaccgggccgtgacccgcatccgctgg
ccgcacggggtcggcgggagcagcttcttcgagaagaacgccccgtctggcaccccgtcg
tgggtgcgcaccgtctcggtgccgaccaccggcagccggggggagtcccggcacggcgac
cggctggtcttcccggtcgtcgacgacctcgcgaccctgacctggttggccaacctcgcg
gccctcgagctgcacgtgcaccagtggcgggtcgggcgcaacgggcggccccgcaacccc
gaccggatcgtcatcgacctcgaccccggcgaccccgccgggctgcacgagtgctgccag
gtggcgctgctggtgcgcgaccggctggccgggcgcggcctggtcgcccgcccggtcacc
agcggcagcaaggggctgcacctctacgccaccctgccccagcgcctcgcggccgacgcc
gcgaccgagctggccaaggaggtcgccgacgagctctcggccgcccgtccccgccacgtc
accgccaccatgaccaaggcgcgccgcggcggcaaggtgttcctcgactggtcgcagaac
gccgcgtcgaagaccaccatcacgccctactcgctgcgcgggcgcgagcggccgtacgtc
gccgcgccggtgtcgtgggccgaggtcgaggccggcgcggaggaccccctggggctggag
cagctgcgcttcgaggaggtcctcgagcgggtcgcggacctcggcgacctgttcgccaag
cccacctga
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