KEGG   Novosphingobium decolorationis: HT578_18325
Entry
HT578_18325       CDS       T07993                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
ndr  Novosphingobium decolorationis
Pathway
ndr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ndr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HT578_18325 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ndr03400]
    HT578_18325 (uvrB)
DNA repair and recombination proteins [BR:ndr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HT578_18325 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HT578_18325 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_19 UB2H DUF87 SWI2_SNF2 Kinesin AAA_22 Microtub_bd AAA_33 AAA SRP54
Other DBs
NCBI-ProteinID: QVM85390
LinkDB
Position
complement(3974662..3976851)
AA seq 729 aa
MTELIIRRGLDEPDTSGSFTPHKPQRPEKSLPGKTFRIVSEYEPAGDQPTAIAELVEGAK
AEDKTQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYAEMKDFFPENAVEYF
VSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRSLLERDDVIIVASVSCLYGIG
SVETYSAMTFDVVSGTEVDQRELIRKLVSLQYKRNDVAFARGSFRVRGDNLEIFPSHYED
TAWRVSFFGDEIEEICEFDPLTGKKGPTLDKVRVFANSHYVTPGPTMKQASEAIRFELEE
RLKELHAEGKLLEAQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYL
PDNALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQT
FAVSATPGGWEMEQTGGVFAEQVIRPTGLIDPPVEIRPTEDQVQDCIAECKAVAEKGFRT
LVTTLTKRMAEDLTEFMHEAGVRVRYMHSDVETLERIELIRDLRMGVYDVLVGINLLREG
LDIPECGLVTILDADKEGFLRSETSLIQTIGRAARNSEGRVILYADRMTGSMERAIAETD
RRREKQQAYNEEHGITPQTIKRRIADIVADTASRDGVTVEIETEDGANNLVGHNLRAYIE
DLEKKMRAAAADLEFEEAGRLRDEIRKLEASELGLPEGEHKAPLVGRSNEGKPGTRKMRY
GKQTRKWGK
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgaccgaactcatcatccgtcgcggactggacgagccggatacctcgggctcgttcacc
ccgcacaagccccagcgccccgaaaaatccctccccggcaagaccttccggatcgtgtcc
gagtacgaaccggccggtgaccagcccaccgcgatcgccgaactggtggaaggcgcgaag
gccgaggacaagacgcaggttctcctgggtgtcaccgggtccggcaagaccttcaccatg
gccaaggtcatcgaggagctgcagcgcccggcgctgattcttgcccccaacaagattctc
gccgcccagctctacgccgagatgaaggacttcttccccgaaaacgcggtcgaatacttc
gtctcctactacgactattaccagcccgaagcctacgtgccgcgctcggacacctacatc
gagaaggaaagctcggtgaacgaggcaatcgaccggatgcgccactcggccacgcggtcc
ctgctcgagcgtgacgacgtaatcatcgtcgcctcggtctcgtgcctttacggtatcggc
tcggtcgagacctattcggcgatgaccttcgatgtcgtctcgggcaccgaggtcgaccag
cgcgaactgatccgaaagctcgtctcgctccagtacaagcgcaacgacgtcgcctttgcg
cgcggctcgttccgggtgcgcggcgacaacctcgaaatcttcccctcgcactacgaggac
accgcctggcgggtctcgttcttcggcgacgagatcgaggaaatctgcgagttcgacccg
cttaccggcaagaagggaccgacgctcgacaaggtccgcgtcttcgccaactcgcactac
gtaacccctggcccgacgatgaaacaggccagcgaggcgatccgtttcgagctggaggag
cggctcaaggaactccacgcggagggcaagctgctcgaagcccagcgcctcgaacagcgc
accaacttcgatctcgagatgatcgcggcaaccggctcgtgcaacggcatcgagaactat
tcgcgcttcctcaccggccgcctgcccggcgagcccccgccaacgctcttcgagtacctt
cccgacaacgcgctcctcttcgttgacgagagccaccagaccgtgccgcagatcggcgcg
atggcgcgcggtgaccaccgccgcaagatcacgcttgccgaatacggcttccgtctgccc
tcgtgcatcgacaaccgcccgctgcgcttcaacgagtgggacgcgatgcgcccgcagacc
ttcgccgtctcggccacgccgggcggctgggaaatggagcagaccggcggcgtctttgcc
gagcaggtcatccgcccgaccggcctgatcgacccgccggtggagatccgtccgaccgag
gaccaggtccaggactgcattgccgagtgcaaggcggtggccgaaaagggtttccgcacg
ctcgtcaccacgctcaccaagcgcatggccgaggacctgaccgaattcatgcacgaggcg
ggcgtgcgcgttcgctacatgcactccgatgtcgagacactggagcgcatcgagctgatc
cgcgacttgcgcatgggcgtctacgacgtgctggtgggcatcaacctcctgcgcgagggc
ctcgacattcccgagtgcgggctcgtcacgattctcgatgccgacaaggaaggcttcctg
cgctcggaaacctcactcatccagaccatcgggcgcgccgcgcgcaattccgaaggccgc
gtcatcctctacgccgaccgcatgaccggttcgatggagcgcgccatcgccgagaccgac
cggcgccgggagaagcagcaggcctacaacgaggaacacggcatcaccccccagacgatc
aaacggcgcatcgccgacatcgtcgcggacacggcgagccgggacggggttaccgtcgag
atcgagaccgaggatggggccaacaacctcgtcgggcacaacctgcgcgcctatatcgag
gacctcgagaagaagatgcgcgccgccgccgccgacctcgagttcgaggaagcgggacgc
ctgcgcgacgagatccgcaaactggaagcgagcgaactggggctccccgaaggcgagcac
aaggccccgctggtcggccgctcgaacgagggcaagccgggcacgcgcaagatgcgctac
ggcaagcagaccaggaagtggggcaaatag

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