Novosphingobium decolorationis: HT578_18325
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Entry
HT578_18325 CDS
T07993
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HT578_18325 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_18325 (uvrB)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HT578_18325 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HT578_18325 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_19
UB2H
DUF87
SWI2_SNF2
Kinesin
AAA_22
Microtub_bd
AAA_33
AAA
SRP54
Motif
Other DBs
NCBI-ProteinID:
QVM85390
LinkDB
All DBs
Position
complement(3974662..3976851)
Genome browser
AA seq
729 aa
AA seq
DB search
MTELIIRRGLDEPDTSGSFTPHKPQRPEKSLPGKTFRIVSEYEPAGDQPTAIAELVEGAK
AEDKTQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYAEMKDFFPENAVEYF
VSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRSLLERDDVIIVASVSCLYGIG
SVETYSAMTFDVVSGTEVDQRELIRKLVSLQYKRNDVAFARGSFRVRGDNLEIFPSHYED
TAWRVSFFGDEIEEICEFDPLTGKKGPTLDKVRVFANSHYVTPGPTMKQASEAIRFELEE
RLKELHAEGKLLEAQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYL
PDNALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQT
FAVSATPGGWEMEQTGGVFAEQVIRPTGLIDPPVEIRPTEDQVQDCIAECKAVAEKGFRT
LVTTLTKRMAEDLTEFMHEAGVRVRYMHSDVETLERIELIRDLRMGVYDVLVGINLLREG
LDIPECGLVTILDADKEGFLRSETSLIQTIGRAARNSEGRVILYADRMTGSMERAIAETD
RRREKQQAYNEEHGITPQTIKRRIADIVADTASRDGVTVEIETEDGANNLVGHNLRAYIE
DLEKKMRAAAADLEFEEAGRLRDEIRKLEASELGLPEGEHKAPLVGRSNEGKPGTRKMRY
GKQTRKWGK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaactcatcatccgtcgcggactggacgagccggatacctcgggctcgttcacc
ccgcacaagccccagcgccccgaaaaatccctccccggcaagaccttccggatcgtgtcc
gagtacgaaccggccggtgaccagcccaccgcgatcgccgaactggtggaaggcgcgaag
gccgaggacaagacgcaggttctcctgggtgtcaccgggtccggcaagaccttcaccatg
gccaaggtcatcgaggagctgcagcgcccggcgctgattcttgcccccaacaagattctc
gccgcccagctctacgccgagatgaaggacttcttccccgaaaacgcggtcgaatacttc
gtctcctactacgactattaccagcccgaagcctacgtgccgcgctcggacacctacatc
gagaaggaaagctcggtgaacgaggcaatcgaccggatgcgccactcggccacgcggtcc
ctgctcgagcgtgacgacgtaatcatcgtcgcctcggtctcgtgcctttacggtatcggc
tcggtcgagacctattcggcgatgaccttcgatgtcgtctcgggcaccgaggtcgaccag
cgcgaactgatccgaaagctcgtctcgctccagtacaagcgcaacgacgtcgcctttgcg
cgcggctcgttccgggtgcgcggcgacaacctcgaaatcttcccctcgcactacgaggac
accgcctggcgggtctcgttcttcggcgacgagatcgaggaaatctgcgagttcgacccg
cttaccggcaagaagggaccgacgctcgacaaggtccgcgtcttcgccaactcgcactac
gtaacccctggcccgacgatgaaacaggccagcgaggcgatccgtttcgagctggaggag
cggctcaaggaactccacgcggagggcaagctgctcgaagcccagcgcctcgaacagcgc
accaacttcgatctcgagatgatcgcggcaaccggctcgtgcaacggcatcgagaactat
tcgcgcttcctcaccggccgcctgcccggcgagcccccgccaacgctcttcgagtacctt
cccgacaacgcgctcctcttcgttgacgagagccaccagaccgtgccgcagatcggcgcg
atggcgcgcggtgaccaccgccgcaagatcacgcttgccgaatacggcttccgtctgccc
tcgtgcatcgacaaccgcccgctgcgcttcaacgagtgggacgcgatgcgcccgcagacc
ttcgccgtctcggccacgccgggcggctgggaaatggagcagaccggcggcgtctttgcc
gagcaggtcatccgcccgaccggcctgatcgacccgccggtggagatccgtccgaccgag
gaccaggtccaggactgcattgccgagtgcaaggcggtggccgaaaagggtttccgcacg
ctcgtcaccacgctcaccaagcgcatggccgaggacctgaccgaattcatgcacgaggcg
ggcgtgcgcgttcgctacatgcactccgatgtcgagacactggagcgcatcgagctgatc
cgcgacttgcgcatgggcgtctacgacgtgctggtgggcatcaacctcctgcgcgagggc
ctcgacattcccgagtgcgggctcgtcacgattctcgatgccgacaaggaaggcttcctg
cgctcggaaacctcactcatccagaccatcgggcgcgccgcgcgcaattccgaaggccgc
gtcatcctctacgccgaccgcatgaccggttcgatggagcgcgccatcgccgagaccgac
cggcgccgggagaagcagcaggcctacaacgaggaacacggcatcaccccccagacgatc
aaacggcgcatcgccgacatcgtcgcggacacggcgagccgggacggggttaccgtcgag
atcgagaccgaggatggggccaacaacctcgtcgggcacaacctgcgcgcctatatcgag
gacctcgagaagaagatgcgcgccgccgccgccgacctcgagttcgaggaagcgggacgc
ctgcgcgacgagatccgcaaactggaagcgagcgaactggggctccccgaaggcgagcac
aaggccccgctggtcggccgctcgaacgagggcaagccgggcacgcgcaagatgcgctac
ggcaagcagaccaggaagtggggcaaatag
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