Neobacillus drentensis: L1999_19530
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Entry
L1999_19530 CDS
T08277
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ndt
Neobacillus drentensis
Pathway
ndt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ndt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L1999_19530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndt03400
]
L1999_19530
Enzymes [BR:
ndt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L1999_19530
DNA repair and recombination proteins [BR:
ndt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L1999_19530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
SLFN_AlbA_2
Motif
Other DBs
NCBI-ProteinID:
ULT55284
LinkDB
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Position
4166679..4168520
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AA seq
613 aa
AA seq
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MKPMLPSLTFDLPVRPDWKYEVKYDGFRAMLTWNQKGIELISRNGKNLLPQFPEIKQFLL
QYEAQFKSYLPLQLDGELVYLENTHKANFSAIQVRGRLKSEKKIEEQATRFPCRLMVFDL
LLVKGNRIYTEPFYKRKEALEKLFRAAGFKLKADPYNDQLLQYVKAHDDFNELWEKVVLY
DGEGIIAKFKNSLWEEGKRTLQWLKYKNWKYVSCFVTAYEKTNGYFYIGVYQDKKICSIG
QVLFGFKPEEKNALQQTIKQNMINEDNQFIYVEPAICLEVKYLELYDNQLREPHFDRFRF
DLQPADCTYDRFMFAQKNLPQELEITHPDKPLWGNFNIQKADYILYLREVSPFMLPFLKD
RLLTVIRYPHGMFGEAFYQKNCPDYAPEFVQTKEAEGIHYILCNNLKTLVWLGNQLAIEF
HIPFQTVDSMGPSEIVFDLDPPSKDAFQLAIKAARLIKEVLDQLNLVGFIKTSGNKGLQI
YLPLPENVYTYDDTRLFTSFIAEYLISKDPDSFTIERMKKNRNNRLYVDYVQHSEGKTIV
APYSMRGNEHAGVATPLYWEEVNDKLDLFSFNMENALKRIRSQGDPFMDYSQTKQLQPFA
PVLEFLKNTSKKG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatgctgccaagtttaacctttgatcttcccgtacggcctgattggaaatac
gaggtgaaatatgatggtttccgggctatgttaacctggaatcaaaaggggatagaacta
ataagcaggaatggaaagaatttattacctcaattcccggaaatcaaacagttccttttg
caatatgaagcccagtttaaatcctatttacctttgcaattagatggtgaacttgtttat
ttggaaaacacacataaagcgaatttttccgcgattcaagtccgaggacgactaaagtcc
gaaaaaaaaattgaagagcaagcaactcgttttccctgccgtctaatggtttttgatcta
ttgttggttaaaggaaataggatctatacagaacccttttataaaagaaaagaagcacta
gagaaattattccgagcagcaggttttaagttaaaagctgatccatataacgatcaactg
cttcaatacgtaaaagcacatgatgattttaatgaattatgggaaaaagtggtcttgtat
gatggagaaggcattattgctaaatttaaaaatagtctttgggaagaaggaaaacgcacg
ctgcagtggttaaagtataaaaactggaaatatgtcagctgctttgtaacagcttatgag
aaaacaaatggctatttttatataggtgtttatcaagacaaaaaaatatgttcgattgga
caagttctatttggttttaaaccagaagaaaaaaatgccttacaacaaacaataaaacag
aacatgattaatgaggataatcaatttatctatgttgaacccgctatctgccttgaagtg
aaatatttagaactatatgacaatcaactgcgtgaacctcattttgatcgttttcgattt
gatttacaacctgctgattgcacctatgaccgctttatgtttgctcaaaaaaatctgcct
caagagttggaaataacccatccagataaacccttatggggaaatttcaacattcagaag
gctgattatattctttatctgcgggaagtttcaccatttatgctgccctttttaaaggac
aggctcttaacagttattcgttatccacatggaatgtttggagaggctttttatcaaaaa
aattgtcctgattatgctccagaatttgtccagacaaaagaggcagaaggcattcattac
attttgtgcaataaccttaaaacccttgtgtggcttggaaaccaactggccattgagttc
catatcccttttcaaaccgtcgatagcatgggacctagtgaaatcgtttttgatcttgac
ccgccatcaaaagacgcctttcaattagcgatcaaagccgctcgattgataaaagaagta
ctagaccaattaaatctggttggttttattaaaacctcaggaaataaaggtttgcagata
taccttcctttaccggaaaatgtctatacctatgatgatacacgattattcaccagcttt
attgcggaatatttgatttcgaaggatcctgattctttcacgattgaacggatgaaaaaa
aatcgaaataacaggttgtatgttgattatgtacagcattctgaaggtaaaacgattgtc
gctccctactcgatgaggggcaacgaacatgcaggtgtcgcaacccctctttattgggag
gaagtgaatgacaaactagatttattctcttttaatatggagaatgcgctgaaacgaatc
cgcagtcaaggtgacccttttatggactattctcaaacaaagcaactgcagccctttgct
ccggtccttgagtttttaaaaaacaccagtaaaaaaggataa
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