Neorhizobium sp. NCHU2750: NCHU2750_25100
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Entry
NCHU2750_25100 CDS
T05650
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nen
Neorhizobium sp. NCHU2750
Pathway
nen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCHU2750_25100 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nen03019
]
NCHU2750_25100 (rhlE)
Enzymes [BR:
nen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCHU2750_25100 (rhlE)
Messenger RNA biogenesis [BR:
nen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCHU2750_25100 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AYD01895
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All DBs
Position
2593618..2595450
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AA seq
610 aa
AA seq
DB search
MPGIVLLAPRKVFDLTNFESLGVSKQIVATLTALGIETPTPIQAQAIPLLLEGRDLIGLA
QTGTGKTAAFGLPLIERLLAENIRPDNRTTRSLILAPTRELVNQIAANLKNFVKGRPLKI
NLVVGGVSINKQQLQLEKGTDILVATPGRLLDLVARRAIGLTTVRFLVLDEADQMLDLGF
VHDLRKIAKMVPKKRQTMLFSATMPKAIADLAADFLTDPTKVEVTPPGKAADKVEQYVHF
VGGKGDKTELLRKSLLDNPDGRAIVFMRTKHTAEKLMKHLDNIGFSVASIHGNKSQGQRE
RALKGFRDGEIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGVA
IAFCAPDETMLLRDIEKLMNIEIKTASGERPETMNRPVRGNGNNRGGNKARGGNAGGNGE
SRPRRERPARKPFFAAEGAEGAGGERGERPARNNRPQRDDRRNGEAHGQRRNEEAKRVEP
DNDLAVTSDLRPNRSQQAPRDGENRNGGQNRGHQGQRQGKSNNGGNRDRAAHGAHEAGKQ
RQKHQHSAADGSQSKPHGQAPAQPKTEGQNNRHAPQGENRGPVRFGNNNRGEQRNEQRGG
GFQGRKRRPA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgccgggaattgtgcttttggcgccccgaaaggtattcgacttgacgaattttgaatct
cttggtgtctccaagcagatcgtcgccacgctcaccgcgcttggcattgaaacgccgacg
ccgatccaggcccaggctatccctcttctccttgaaggccgcgacctgatcggtctcgcc
cagaccggcaccggcaagactgccgctttcggccttccgctgatcgagcgcctgctcgcc
gaaaacatccgtcccgacaaccgcacgacccgttctctcatcctggcgcctacccgcgaa
ctggtgaaccagatcgccgccaacctgaagaacttcgtcaagggccgcccgctcaagatc
aacctcgtcgtcggtggcgtatcgatcaacaagcagcagttgcagctcgaaaagggcacc
gacatcctggtggccacgccgggccgcctgctcgatctcgtcgcccgccgtgccatcggc
ctgaccacggtccgcttcctcgttctcgacgaagccgaccagatgctcgacctcggcttc
gtgcatgacctgcgcaagattgcgaaaatggtgccgaagaagcgccagacgatgctgttc
tcggccaccatgccgaaggcaatcgccgatctcgccgcagacttcctcaccgacccgaca
aaggtcgaggtcacccctccgggcaaggctgcagacaaggtcgagcagtatgtccacttc
gtcggcggcaagggcgacaagaccgagcttctgcgtaagtcgctgctcgacaatccggat
ggccgcgccatcgtcttcatgcgcaccaagcacaccgccgagaagctgatgaagcatctc
gacaatatcggcttctcggtcgcatcgatccacggcaacaagagccagggccagcgcgag
cgtgccctgaagggtttccgtgacggcgagatcaagacgctgatcgccaccgatgtcgca
gcccgcggtatcgacatcccggccgtcagccacgtctacaattacgacctgccggaagtg
cccgacgcctacgttcaccgtatcggccgcaccgcacgcgccgggcgtgatggcgtcgcc
atcgctttctgcgctccggatgaaaccatgcttcttcgtgacatcgaaaagctgatgaac
atcgagatcaaaacggcctcgggtgaacgccccgaaacgatgaaccgcccggttcgcggc
aacggcaacaaccgtggcggcaacaaggcccgtggcggaaatgccggcggtaacggcgaa
agccgtccgcgccgcgagcgccctgcccgcaagccgttctttgcggccgaaggcgcggaa
ggtgccggcggagagcgtggcgagcgccctgcccgcaacaatcgtccgcagcgcgatgat
cgtcgcaatggcgaggcccatggccagcgccgtaacgaggaagccaagcgcgtcgagccg
gacaacgatctggccgtgacctcggatcttcgccccaaccgcagccagcaggctccgcgc
gacggcgaaaaccgcaatggcggacagaaccgtggtcatcagggccagcgccagggcaag
tcgaacaatggcggcaatcgcgatcgcgcagcccacggcgcccatgaagccggcaagcag
cgccagaagcaccagcactcggcagccgacggttcccagtccaagccccatggccaggcc
ccggctcagccgaagaccgaaggccagaacaaccgccatgcaccgcagggcgaaaatcgc
ggcccggtccgcttcggcaacaacaaccgtggcgaacagcgcaacgagcagcgcggcggc
ggttttcagggccgcaagcgtcgtccggcgtga
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