Nocardia farcinica IFM 10152: NFA_38680
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Entry
NFA_38680 CDS
T00207
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFA_38680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfa03019
]
NFA_38680
Messenger RNA biogenesis [BR:
nfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NFA_38680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
BAD58716
NIH_Japan:
nfa38680
UniProt:
Q5YSX5
LinkDB
All DBs
Position
complement(4082494..4084575)
Genome browser
AA seq
693 aa
AA seq
DB search
MTTPRRPRRTASRPAGAPDPAEQRRAAEAAAERAESARPAEPAAEPAAEPAADRPGGSAG
EPTAPAGTDQPTAPAKAERPARGDRGDARTQRQDKPARGDSGEGRSAGGRRSGRGGRQGR
GRAEQLPAQPPVVAAQDRLGAPPKLPKNGLRVFALGGIGEIGRNMTVFEYGGKLLIVDCG
VLFPEDQQPGVDLILPDFRPIEDRMDDIVAIVLTHGHEDHIGAVPFLLRNRSDIPVLGAK
FTLALVAAKCREHRLHPKLIEVTEGETTSHGPFECEYFAVNHSIPDALAVAIRTPAGVAL
HTGDIKLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVI
GKARGRVIVASFASHVHRIQQVVDVAQKYGRRVCFVGRSMVRNMQIAQDLGYLTVPDGVV
VDLDVAATLPGDRLVLISTGSQGEPLSALSRMARGDHRQINIRPDDLVVLASSLIPGNEN
SVFAVVNGLARLGASVITQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRAN
AALAVATGVPEERVVLAEDGVVVDLVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRL
VLGEGGFISITVAIDETTGKAVSAPELSGRGFSDDPTALAEAAELVEAELLRLAGEGITD
THRIAQGVRRVVGRWVADTYRRRPMIVPTVIGV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaccgcgccgtccccgccgcacggcgagccgccccgcgggcgcgcccgacccg
gccgaacaacgccgcgccgccgaagccgccgccgagcgtgcggagtcggcacggcccgcg
gaaccggccgccgaacccgccgcggaaccggccgccgaccggcccggcgggagcgccggt
gagcccaccgctccggcgggcaccgaccagcccaccgccccggccaaggccgagcggccg
gcccgtggcgaccggggcgacgcccgtacccagcgtcaggacaagcccgcccgcggcgac
tccggtgagggccgctccgcgggtggccgccgctccggccgcggcggcaggcagggccgc
ggccgcgccgagcagttgcccgcgcagccgccggtggtcgcggcacaggatcggctcggc
gccccgccgaagctgcccaagaacggcctgcgggtgttcgcgctcggcggtatcggcgaa
atcggccgcaacatgacggttttcgagtacggcggcaagctgctgatcgtcgactgtggc
gtgttgttccccgaggaccagcagcccggtgtggacctgatcctgcccgacttccggccc
atcgaggaccggatggacgacatcgtcgcgatcgtgctcacccacggccacgaagaccac
atcggcgcggtgccgttcctgctgcgcaaccgctccgacattccggtgctcggcgcgaag
ttcactctcgcgctggtcgcggccaagtgccgcgaacaccggctgcacccgaagctgatc
gaggtgaccgagggcgagaccacctcgcacggccccttcgaatgcgagtacttcgccgtc
aaccactccatcccggacgcgctggccgtcgccatccgcaccccggcgggcgtcgcgctg
cacaccggtgacatcaagctcgaccagctgccgctggacgggcgcctcaccgatctggcc
gggttctcccgcctgggcgacgaaggcgtcgacctgttcctggtcgactccaccaacgcc
gaggtgccgggcttcgtcacccccgaacgcgagatcggcggcgtcctggacacggtgatc
ggcaaggcccgtggccgggtgatcgtggcgtcgttcgccagccatgtgcaccgcatccag
caggtcgtggacgtggctcagaagtacgggcgccgggtgtgtttcgtgggccgctcgatg
gtgcgcaacatgcagatcgcccaggatctcgggtacttgacggtgcccgacggcgtggtc
gtcgacctcgatgtcgccgcgaccctgcccggcgaccgcctggtgctgatctccaccggg
tcccagggggagccgctgtcggcgctgtcgcggatggcgcgcggcgaccaccgccagatc
aacatccgccccgacgacctggtggtgctggcgtcctcgctgatcccgggcaacgagaac
tcggtgttcgcggtcgtcaacgggctggcacggctcggcgcctcggtcatcacccagcag
aacgccaaggtgcacgtctccgggcacgcctcggcgggcgagctgctctacctgtacaac
gcggtgcggccgacgaacgcgatgccggtgcacggcgagtggcggcacctgcgggccaac
gcggcgctggctgtcgcgaccggggtgcccgaggagcgggtggtgctcgccgaggacggg
gtggtcgtcgacctggtggacgggatcgcctcgatcgtgggccgcgtgccggtcggccac
gtctacgtcgacgggctctcggtgggcgatgtcggcgagtcgacgctgtccgaccgcctc
gtgctgggcgagggcggtttcatctcgatcaccgtcgccatcgacgagacgaccggaaag
gccgtcagcgcaccggaattgagtggtcgcgggttctccgacgacccgaccgcactggcc
gaggccgccgaactcgtggaggccgaactgctgcgcctggccggggaaggcatcaccgac
acccaccgcatcgcccagggtgtgcgccgcgtggtcgggcgctgggtggccgacacctac
cggcgccgtccgatgatcgtgcccaccgtcatcggggtctga
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