Neodiprion fabricii: 124181687
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Entry
124181687 CDS
T08986
Name
(RefSeq) endoribonuclease Dcr-1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nfb
Neodiprion fabricii
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nfb03036
]
124181687
Chromosome and associated proteins [BR:
nfb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124181687
microRNA pathway
RISC loading complex
124181687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
ResIII
Motif
Other DBs
NCBI-GeneID:
124181687
NCBI-ProteinID:
XP_046424424
LinkDB
All DBs
Position
4:complement(27697670..27709068)
Genome browser
AA seq
1932 aa
AA seq
DB search
MAFPLNDQVHTKSFSPREYQVELLYAALESNIIVCLGKNSEQIFIVIKLIQELATNNRRS
PSEGGKRSVYILRDTDRCLTKAVYIQQLTDLRVLICDSETWPEFDRKFAESQVIVATSHV
CADLLNQNKIYPSQINLAIVDQCHKAVNDEKLKFVLQKFNVSNGPRLIGFAAPVFNLTRQ
PGRLEAEVELLEKTFHCRIETASDIVSVLRYSPKPKEYIVEYKCGEYEELNQTLENCAMH
AMNFLCDHRYDPTEIYNDEFLEDIQKIPDPKQEPCSMIEDFLYVLQTFGAWCANHAALAL
LIQAEKLKVKTPYERHYLLFNVVVSLFIKIRAICESEFENLSEREKLYKFSTPCVHRLLH
ILKCYAPSSKKEFTIPDNKLSNGHSVSACKKEIDTGKDGLQQSKYIGNVKKLRTGIKRPP
KSRYPRTQIDPDLLCGVIFVDKGFTAKILFYLLNDACKYDKDLQFLSPLYTIEKNPEGTS
SAHDMEVQHRKQEEVLKSFRIHECNLLIATSILEEGIDIPKCNFVMRYDFPKSYQSYVQC
KGRARATDALHVLFVSEKISNECIQKLAEYHYIEQTLLSKCANKEPSEEEELLADKYGDL
LPQYKPLSIEGSPSVTFNSAISLVNRYCAKLPSDTFTRLTPEWIIEPTIIDNKTMYVCSI
RLPINSPVKYTVTSYPMPNSAMARRLAALQLCIDLHRANEIDDYLLPIGKENFKANPEDA
EAPPLPDETKAEFSEARPGTTKRRQYYYKKTAEVLTDCRPVLMTKSFLYHISMVLTCPLP
EEQNTRGRRIYPPEESAIGFGILTLKKIPKLCPFPIYTRSGEVHVKLELSKETVTLNADQ
IERVAAFLKYTFTNVLRLQKYLMLFDPNASENSYFIVPVKTVITENGPDVHVDWEFLERI
YENRNAIPNEVSEGDRNQFKFDATKYHDAVIMPWYRNKDQPQYFYVAEICANLNPKSSFP
GADYSTFEEYYLKKYNIQIQNLNQPLLDVDHTSARLNFLTPRYINRKGVALPTSSEETKK
AKRENLEQKQILVAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAKMINLG
QQHLDPDFEWLPLDFGWSLSEVLNKSKDSSKLIEMKSDAKTTKSVIPKLTDSMSVAEEIE
KDISSKHDSSVDKDNEMEIGTWSNEMAINAVELNNENIFSPNLTVLQDTFSWNDIRYGSP
ACDSDLDAYDTDDTSSEAMGDFSDESDEGGGGLRIAFMGDNVAEAVEDENRIRKNEINKR
ILDLLELERSYDEDVWQCSNDIQNGLIQQHETAQNIETSRTKEEILTNGMFIRSDQEIVL
KRRSSAVQNKTDLLPSEYYEYISQVSKRFTHEVINTQPLRQPIKKQSNNSQILEEADDSL
FSFDYQPNLNGHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYSITTYLYCTYDN
IHEGKLSHLRSKQVSNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPREIEQALIE
SGVPSNLWNQADIPVLRAVNPNEISELVRETEHKLEIMRTELIRSSNDSATDFEKLRCFI
PYNLITQHSIPDKSVADCVEALIGAYLIACGPRGAFLFMAWLGIHVLPFQKVSIISTNEP
LDRPPGSSSYIKEINENGETCWTQIRYGNLDEPQCPLLRHVPDPEKELSLMLDGYSDLEE
SMGYKFREPSYLLQAFTHASYQPNKLTDCYQRLEFLGDAVLDYLITRHLYEDTRQHSPGA
LTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNVVIDRFVRIQEENGHSISEEYYLIA
EDECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWRVYYKIMRSEIEQFSTNVPKS
PIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKK
LKKMQRHQREKL
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggcatttccattaaatgatcaagttcatactaagtctttctctcctagagaatatcaa
gtggagctcctctacgcagctttagagagcaacataatagtttgtctaggaaaaaattct
gaacaaatatttattgttatcaaactaattcaagagttggcgactaacaaccgaagatct
ccgtcagaaggaggcaagcgctcagtatacattctaagggatacagatcgatgtttaacc
aaagctgtatatatacaacaattaacagatttacgcgtgcttatctgtgattctgagaca
tggccagagttcgatagaaaattcgctgaaagtcaggtgattgtcgctacatcacatgtt
tgtgcagatctgttgaatcagaataaaatttatccaagtcaaataaatttggcaattgta
gatcaatgccacaaagcagtcaatgatgaaaagctaaagtttgttttacaaaaatttaat
gtctctaacggtcctcgactaattggttttgctgcaccagtttttaatctaactcgtcag
ccaggacgactggaagcagaagttgaacttttggaaaaaacctttcattgtagaattgaa
acagccagtgatattgtatcagtattaagatatagtccaaaaccaaaagagtacattgta
gaatacaaatgtggcgaatatgaagaattaaaccagactctggagaactgtgctatgcat
gctatgaactttttgtgtgatcatcgctatgatcccactgaaatttacaacgatgagttc
ctcgaggacatacagaagattcctgatcctaaacaggaaccttgctcaatgatagaagac
tttttgtacgtacttcaaacattcggggcttggtgcgccaatcacgctgctctagctttg
ctaattcaagcagaaaagctgaaagtaaaaaccccttatgagcgacactacttattattc
aacgttgtggtttccttgtttattaaaataagagctatttgtgaaagtgaatttgaaaat
ttgagcgaaagagaaaaattatacaaattctccactccatgtgttcatcgactattgcat
atactcaagtgttatgccccatccagcaaaaaagaattcactatcccagacaacaaactg
agcaatggacacagtgtatctgcctgcaagaaagagattgatactggaaaagatggcctc
caacaatcaaaatacattggaaatgtcaaaaagctacgaactggtattaaaagacctcca
aaatcacggtatccacgtactcaaattgatcccgatctgttgtgcggagttatttttgtg
gataaaggatttacagcaaaaatattattttatctattgaatgacgcttgtaagtatgac
aaagatttacaatttctctctccactttatacaattgaaaagaatcctgagggaacaagc
tctgctcatgacatggaggttcaacatcggaaacaagaggaggttttaaaaagcttccga
atacacgaatgtaatttattaattgctacatcgatattggaggagggaatagatatacca
aaatgcaattttgtgatgaggtatgatttccctaagagctatcagtcttacgtgcagtgc
aaaggccgagctcgggcaactgatgcccttcatgtgcttttcgtgagtgaaaaaatatcc
aatgagtgtatacaaaagttagctgaatatcactatattgaacagactttattatcaaag
tgtgccaataaggaaccttcggaagaagaagaattattggcggataaatatggcgatttg
ttacctcagtacaaaccattgagtattgagggttcacctagtgttacttttaattctgca
atatctttggtaaacaggtattgtgccaagctgcctagtgatacattcactcgattaaca
ccagaatggataattgaaccaacaattattgataataaaaccatgtatgtttgttccata
cgtttgccaataaactcgcctgtgaaatacacagtaacgtcatatccaatgccgaatagt
gcaatggctcgtcgcttggctgcacttcaactctgcatagatcttcatagagctaatgaa
attgatgattatttgttgccaattggtaaagaaaattttaaagcaaacccagaagatgct
gaagcccctccactaccagatgaaacaaaagctgagttttctgaagcgcgcccaggtacc
actaaacgaagacaatactactacaaaaagactgctgaagtgttaacagattgcaggcct
gtactgatgacgaaatcgtttttatatcatattagtatggtactcacttgccctttacct
gaggaacaaaacacaagaggtcgtcgaatatatcctcctgaagagtcagctataggattt
ggcattctaactctaaaaaaaataccaaagctatgtccattcccaatatacacgagatca
ggagaggttcatgtaaaacttgaattaagtaaggagacggttacattgaatgctgatcaa
attgaacgagtagcagccttcctcaagtacacgttcacaaatgttctaaggcttcaaaaa
tatctgatgctatttgatccgaatgcttcagaaaattcatacttcattgttcctgtaaaa
acggttatcacagaaaatggcccggatgttcatgtggattgggagttcttagaacgtata
tatgagaacaggaatgcaataccgaatgaagtgtcggaaggagatcgcaatcaattcaaa
tttgatgcaactaaatatcatgatgctgttattatgccatggtatagaaataaggatcag
ccacaatacttttatgtagcggaaatttgtgccaacttgaacccaaaatcttcttttcct
ggggctgactatagtacatttgaggagtattatttgaaaaaatataacatacagattcag
aatctgaatcaaccgctacttgatgtagatcatacttcagctaggctcaattttctcaca
ccaagatacatcaatcgtaaaggtgttgcattaccaactagtagtgaggaaaccaagaag
gcaaagagagaaaatttggaacaaaaacaaatattggtagcagagctttgtgctattcat
ccatttcctgcctcattatggagacaagcggtttgtctgccatgcatactttatagaatc
aacgcacttcttcttgctaatcaaatacgatgccaggtagcaaaaatgataaatttgggg
cagcaacatttagatccagactttgaatggttgccattagactttggttggagtctatcg
gaagtcttgaataaatcaaaggacagtagtaaattgattgaaatgaaaagtgatgctaaa
actacgaaatctgttatacctaaattgacagacagtatgtccgtggcagaagaaattgag
aaagatatctcttcaaagcatgacagttccgtggataaagataatgaaatggaaattgga
acgtggtctaatgaaatggctataaatgcagtggaattgaataatgaaaatattttttca
ccaaatttaacggtgctacaagataccttttcttggaatgatattaggtacggctcacct
gcctgtgattctgatttagatgcttacgatactgatgacacctctagtgaagcaatggga
gatttttcagacgaaagtgatgaaggtggtggtggtctacgcattgcttttatgggagat
aatgttgcagaagctgtggaagacgaaaatagaatccgtaaaaatgaaattaataaaaga
attttggatttattagagttggaaagaagttatgacgaggatgtttggcagtgttccaat
gatattcagaatggattaattcaacaacatgagacagctcaaaatattgaaactagtcga
accaaagaagaaattctgacgaatggaatgtttattcgtagcgatcaagaaatcgttttg
aagaggcgttcatcagctgtacaaaataaaactgacttactgccgtctgagtattatgaa
tacatctctcaggtttcgaaaagatttacacatgaagttattaatacgcagcctctgagg
caacccattaagaaacaatcaaacaactctcagatattggaagaagcagacgattctctt
tttagttttgattatcaaccgaatctaaatggtcaccctggaccaagtccgagtttaatt
cttcaagcgttgacaatgtcaaatgctaacgatggtattaatttagagaggctcgaaact
attggagattcttttctaaaatattcaataaccacatacttgtattgtacatatgacaat
atacatgaaggaaaattgagtcacctgagatcaaaacaagtgagcaatttaaatttatac
agattaggccgtcgaaaagtattgggtgaaagtatgatagcaactaaatttgaaccgcac
gataattggttaccaccatgctattatgtaccacgtgaaatagaacaagcattaatagaa
tctggagtgccgtcaaatttgtggaaccaagcagatattccagttctcagagctgtaaat
ccaaatgaaatatccgaacttgttcgagaaacggagcataaactcgagattatgcggact
gaactgattcgaagcagcaatgattctgcgaccgattttgaaaagttacgatgtttcata
ccatataatctaattacacagcatagtataccagataaaagtgtcgctgactgtgtggaa
gctttaataggagcatatttaatagcgtgtgggcccagaggagctttcttattcatggcc
tggctaggaattcatgtcttaccattccaaaaagtttctatcatatccacaaatgaacca
cttgacagacctccgggtagttcgtcctatattaaggaaattaacgaaaatggagaaaca
tgctggacacaaatacgctatggaaacttagatgagccacagtgcccacttttgaggcat
gtaccagatcctgaaaaggagttgagcctgatgctggatggttatagcgatcttgaagaa
agtatgggctacaaatttcgtgagccgagttacttattgcaagcattcacccatgcatcg
tatcagccaaataaattgacagactgttaccaacgcttagaatttcttggagatgcagtt
ttagattatctgataacaagacatttgtatgaggatacaagacaacattcccctggtgct
ctaacagatttgaggtcagctttggtaaataatacaatatttgcttcgttggcagtcaga
tgtggatttcataaatatttccgccatctatcaccaggtttaaatgtggtcattgacaga
ttcgtcaggatacaagaagaaaatggtcactctatcagtgaagaatattatttaattgct
gaagatgaatgcgaagaggcagaagacgttgaagttccaaaggctttaggtgatgttttt
gaatctttggcaggagcaatttatttagacagtggtatgtctcttgacgctgtttggagg
gtgtattataaaatcatgaggtccgaaatagaacaattcagtacaaacgtaccaaaatct
ccaataagagaattattagagttggaacctgaaacagcaaagtttgggaagcctgaaaaa
ctagctgatggtcggcgtgtaagagtcacagtagatgtgtttgggaagggttctttcaaa
ggaataggaagaaattatcgcattgctaaatgtacagctgcaaaatgtgcacttaaaaaa
ctaaaaaaaatgcaacgacatcaaagagaaaaactgtga
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integrated database retrieval system
