Nocardioides faecalis: KG111_06075
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Entry
KG111_06075 CDS
T09118
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nfc
Nocardioides faecalis
Pathway
nfc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KG111_06075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfc03400
]
KG111_06075
Enzymes [BR:
nfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KG111_06075
DNA repair and recombination proteins [BR:
nfc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KG111_06075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Motif
Other DBs
NCBI-ProteinID:
QVI59888
LinkDB
All DBs
Position
complement(1311162..1312739)
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AA seq
525 aa
AA seq
DB search
MSGDPLERYRRMRDFARTPEPEGEGARPGAGRRFVVQRHRASRLHYDLRFEIDGVLVSWA
VPKGPTLDPDVRRLAVHVEDHPVEYLHFEGIIPSGEYGGGDVVVWDAGTWEPVHTDDPAA
AVAAGELHAEMHGRKLRGRLVLVRTGTDGERESWMLRHKHDEHAVPGWEPEAHPRSVLSG
RTNAEVAEDPDRAWRSDAPAAEAEVSLLPEPLPGEAIDALADLGGSGTWAVFGRRLKVTN
LDKVLFPGADGEPPITKRELLAYTARVAPVVVPYLEGRAVNLHRYPDGVEGKGFWHKARP
DHAPDWVGAWDNPDAGAGETTTYVVVDEPATLVWAANFGGLEWHPWTSRTTAPEEPTYAL
IDLDPGERTSWEELLTLARLHRTALEHLGVTARAKVTGSRGIQIWVPVVGGYTFDDTRAW
VERLSRTVGKVVPELVSWKWEVKQREGLARLDFTQNAVNKTLVAPYSPRPRPGAPVSVPI
SWSELDDPDLRPDRWTIRTVLDRLARRGDPFRALLGAAQELPEIT
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgaccccctcgagcgctaccgccggatgcgcgacttcgcgcggacgcccgag
cccgagggcgagggcgcccggccgggcgcggggcgccgcttcgtggtgcagcggcaccgg
gcgagccgcctgcactacgacctgcgcttcgagatcgacggcgtgctggtgagctgggcg
gtgcccaagggccccacgctggacccggacgtgcgccggctcgccgtgcacgtcgaggac
caccccgtggagtacctgcacttcgagggcatcatccccagcggcgagtacggcggcggt
gacgtggtcgtgtgggacgccggcacctgggagccggtgcacaccgacgacccggcggcc
gccgtggccgcgggcgagctgcacgccgagatgcacggacgcaagctgcgcggccggctg
gtgctggtgcgcaccggcacggacggtgagcgggagtcctggatgctgcggcacaagcac
gacgagcacgccgtaccgggctgggaacccgaggcgcacccgcgctcggtgctgagcgga
cgcaccaacgccgaggtggccgaggaccccgaccgggcctggcgctcggacgccccggcc
gccgaggccgaggtctcgctgctgcccgagccgctgccgggcgaagccatcgacgcgctc
gccgacctcggcggatccggcacctgggcggtcttcggccgccggctgaaggtgaccaac
ctggacaaggtgctgttccccggcgccgacggagagccaccgatcaccaagcgcgagctg
ctcgcctacacggcgcgggtggcacctgtggtggtgccctacctcgagggccgcgccgtg
aacctgcaccgctaccccgacggcgtcgagggcaagggcttctggcacaaggcacggccc
gaccacgccccggactgggtcggcgcgtgggacaaccccgacgcgggcgccggcgagacc
acgacgtacgtcgtcgtcgacgagccggccaccctggtgtgggccgccaacttcggcggc
ctggagtggcacccgtggacctcccggacgacggcacccgaggagccgacgtacgccctc
atcgacctcgaccccggcgagcgcaccagctgggaggagctgctcaccctcgcccggttg
caccgcaccgcgctggagcacctcggcgtcacggcccgggcgaaggtgaccggcagccgc
ggcatccagatctgggtgccggtggtgggtggctacaccttcgacgacacccgggcctgg
gtggagcgcctgtcgcggaccgtcggcaaggtggtgccggagctggtgagctggaagtgg
gaggtcaagcagcgcgagggcctggcccggctggacttcacccagaacgcggtgaacaag
acgctggtggcgccctactcgccccggccccggcccggcgcgccggtgtcggtgccgatc
tcgtggagcgagctcgacgacccggacctgcggcccgaccgctggacaatccgcacggtg
ctcgaccggctcgcccggcggggcgacccgttccgggcgctgctgggcgcggcgcaggag
ctgcccgagatcacctga
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