Aspergillus fischeri: NFIA_012460
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Entry
NFIA_012460 CDS
T01070
Name
(RefSeq) regulator of nonsense transcripts, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nfi
Aspergillus fischeri
Pathway
nfi03013
Nucleocytoplasmic transport
nfi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
NFIA_012460
03015 mRNA surveillance pathway
NFIA_012460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_012460
Enzymes [BR:
nfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
NFIA_012460
5.6.2.5 RNA 5'-3' helicase
NFIA_012460
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
NFIA_012460
mRNA cycle factors
Common to processing body (P body) and stress granule
NFIA_012460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
PIF1
Helicase_RecD
nSTAND3
AAA_22
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
4590629
NCBI-ProteinID:
XP_001264454
UniProt:
A1D2B4
LinkDB
All DBs
Position
Unknown
AA seq
1079 aa
AA seq
DB search
MAAIGDGRAPADLDETTLNMTGGPRPRRHDDEDDGSDNFGDDDVDSVTSAAVTGRRQNEG
NLEEEKELPPHACAYCGIHNPSSVVKCLACSKWFCSARGNTSSSHIVNHLVRARHKEVQL
HPASSLGDTILECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCAAMPSSKDMNWDTSRWQ
PLIEDRSFLPWLVAAPSDQEQLRARHLSPQLIAKLEEMWKENSQATFADLEKATAVDDEP
APVLLRYDDAFQYQNIFGPLVKIEADYDRKLKESQSQDGLIVRWDLGLNNKHLASFILPK
LELGDVKLAVGDEMRLKYTGELRPKWEGVGYVIKIPNNQSDEVTIELRAKGDHKSVPTEC
THNFTADYVWKSTSFDRMQLAMKTFAVDEMSVSGYIFHRLLGHEVAAAPMKTQLPKKFSV
PGLPELNGSQINAVKSVLQRPMSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNV
AVDQLCERIHRTGLKTVRVTAKSREDVESPVGFLSLHEQVRLNDSNIELIKLNQLKAELG
ELSSQDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPE
CMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVILGCSPIRLNVQYRMH
PCLSEFPSNMFYEGSLQNGVSAFDRLRRDVDFPWPVVDSPMMFWSNLGNEEISASGTSYL
NRTEATNVEKIVTRFFKAGVQPADIGIITPYEGQRSYIVSSMQANGTFKKEHYKEIEVAS
VDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSKHPLW
NCLLQHFKERHCLVEGPLSNLQESLIQFSRPKQSYRGPQRFQMAYNHASNVTSGMMNGRN
GHRNEFHETGSVIGYIPDDVSSVHSSALGGVSIPSGYPPMFQNFADAWPALPGARRANGA
RGKGAPSVAGESVAATESDITGSIIDGRSVDQGGVSLAGLSINDMSKQPSLSQSDRLKRY
VESGGREPYRAGVPDNGSIFGGSSASIRVTRGVPGHVHDDDDTRSVSTAFASQVGGNYD
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggctgctattggcgatggtagggctccagcggatctcgatgagactactctgaacatg
accggcggtccgcgcccaaggagacacgacgatgaagatgatggatcagataattttggt
gacgacgacgtcgacagtgttaccagcgccgctgtgactggccgcaggcaaaatgagggc
aaccttgaggaggagaaggagcttcctccgcatgcatgcgcttattgcggtattcataat
ccgagcagtgtggtaaaatgtctggcttgcagcaagtggttttgcagtgctcgtgggaac
acatcatcttcgcatatcgtcaaccatcttgtccgagctcgccacaaggaggttcagctt
caccccgcctcgtccctgggcgacactatcctggagtgttacaactgcggaactaagaac
gtttttctactgggttttattccagccaaatccgacacagttgtggttttgctttgtcgt
caaccctgtgctgccatgccgtcttcgaaggatatgaactgggacacttcgcgctggcag
ccactgattgaggatcgctcattcctgccatggcttgttgccgctccatcagatcaagag
cagctccgagcccggcatcttagcccgcagttaatcgcaaaactggaggaaatgtggaag
gagaattcccaggcgacttttgcggacctggagaaagccacggcggtagatgatgagcct
gcgcctgttctcttacgttatgacgatgcttttcagtaccaaaacatcttcggtcccctg
gtcaagattgaagcagactacgatcgtaagctgaaggaatctcagtcacaggatggtctc
atcgtccgttgggaccttggcttgaacaacaaacatcttgccagcttcattctgcccaag
ctcgagcttggagacgtgaaattggccgtgggagatgagatgcgcctcaagtacacgggt
gagctacggcccaagtgggagggtgtgggatacgtcataaagattcccaacaatcagtct
gatgaagtgacaatcgagttgcgcgctaagggcgatcacaagtctgtacccaccgaatgc
acccacaacttcactgcggactatgtctggaaatcaacctcattcgatcgtatgcagctc
gccatgaagactttcgctgttgacgaaatgagcgtgtccggttatatcttccatcgcctc
cttggacatgaagttgccgctgcaccgatgaagactcagctaccgaagaaatttagtgta
cctggcctgcccgagctcaacggaagccagatcaatgcagtcaagagtgtgctacagcgg
cccatgagcttgattcagggtcccccaggaaccggaaagactgttacgtctgccacgatt
atttaccatctcgcaaagatcaacggaggtcaagtcttggtctgcgcaccatccaacgtt
gcggtcgatcagctgtgcgagcgtattcacaggaccggtctcaagacagtacgtgtgact
gccaagtcgcgtgaggacgttgagtcacccgtgggcttcctttccctgcacgagcaagtt
cgcctgaacgacagcaacattgaactcatcaagctcaaccagctcaaggccgagctgggc
gaattgtcgagtcaagacgagaagcgtttgaagcaactcactcgttctgcagagcgtgag
attctgaacaatgccgacgtcatttgctgtacttgcgtcggcgctggcgacccgcggctt
gcgaagctcaaattccgcaccgtcttgattgatgaatcgacgcagtcggctgagcctgag
tgtatgattccactggtccttggttgcaagcaggtcgttctggtgggtgaccaccagcag
cttggacctgttattatgaacaagaaagcggctaaagcgggcttgaaccaatccctcttt
gagcggctcgttatcctcggctgctcccctattcgactgaatgtgcagtaccgtatgcac
ccgtgcttgtcagagttcccatcgaatatgttctatgaaggatctctgcaaaatggcgtc
tctgcttttgaccgacttcgccgtgacgtggatttcccttggcctgtcgttgacagtccc
atgatgttctggtcgaaccttggcaacgaagagatttcggcgtcaggaacttcgtatctc
aaccgaaccgaagctacaaacgtggagaaaatcgtgacccgcttcttcaaggccggtgtg
caaccagccgacattggcatcatcacgccttacgagggtcaacgtagttacatcgtcagc
tctatgcaggctaatggcacattcaagaaggagcactacaaagaaatcgaagtcgcatcg
gttgatgctttccaaggccgagagaaagacttcattatcctttcctgtgtgcgttccaac
gaccaccaaggcatcggtttcttgagtgatccgcgtcgcctgaacgttgcgcttactcga
gcgaagtatggtctggtcattcttggaaatccaaaggttctgtccaagcatccactgtgg
aactgtctactgcaacatttcaaggaaagacactgtcttgtggaggggcctctgtccaac
cttcaggaatctcttattcaattcagtcgtccaaagcagtcatatagaggtccacaacgg
ttccagatggcttacaatcatgcatccaacgtcaccagtggaatgatgaacggtcggaac
ggtcaccgaaatgagttccatgaaaccggctcggtgattggctatattcccgatgatgtc
tcctccgtacactcctctgcccttggaggcgtcagtatcccctcaggatatccaccgatg
ttccagaacttcgcagacgcctggcctgctcttcctggtgccagacgagctaatggggcc
agaggaaaaggagcacctagcgttgctggggaatccgtggcagctactgagtccgacatt
acgggaagtatcatcgatggaaggagcgttgatcagggcggtgttagccttgctgggttg
agcatcaacgacatgagcaagcagcctagtctcagtcagtctgacaggttgaaacgttac
gtggaatcgggcggacgggagccgtacagggctggcgttcccgacaacggtagcatcttt
ggaggaagctctgccagcatccgtgtgactcgcggtgttcccggacatgttcacgatgat
gatgacactcgcagcgtctccaccgcttttgcgagccaagtcggaggtaactacgattga
DBGET
integrated database retrieval system
