Nocardia farcinica NCTC11134: ERS450000_05035
Help
Entry
ERS450000_05035 CDS
T04524
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ERS450000_05035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_05035 (mfd)
Enzymes [BR:
nfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ERS450000_05035 (mfd)
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ERS450000_05035 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
AAA_22
UB2H
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CRY82560
UniProt:
A0A0H5P404
LinkDB
All DBs
Position
p2:1665211..1668828
Genome browser
AA seq
1205 aa
AA seq
DB search
MSSSRPPLAGLAAVAGADAALRTVADLVGTTTVDMVAPAAARSFVAATVAGKRPVVVVTA
TGREADDLTVELTEILGDSVAQFPSWETLPHERLSPSADTVGRRLAVLRRLAHPDDPVFP
VPLRVVVTTVRSLMQPMAAGLGDIEPIVLREGAELDFDDLLTRLVEFAYTRVDMVGKRGE
FAVRGGILDLFPPTADHPVRVEFWGDEVTQVRAFAVADQRSLPEIEIDTVVATPCRELLL
TAPVRERAAQVAAANAADAALVEMLDKLAEGIPVEGMEALLPVLQPGELTLLTEQLAAGT
HVLLCDPEKIRTRAADLVRTGAEFLEASWTAASFGADAPLGGNGLDLAASSYRALPQIRE
DADRHGLAWWTLSPLASGDPAEVVLPLQQAPTARGSDELVATIFASLRAHVTTGGRAVVV
VAGHGTAQRVLERLADAEVPATALTAGAEPAPGVVGVLCGTLHDGVVFADAALVVVAESD
LTGNRVTAPGEGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIA
GELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETVDQMTAIAEVKADMEKPVPMDRV
VCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGFPVTVKGLSR
FTDPAESRAVLEGMADGSVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDKQVTAAIRRE
LLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDTLERTVQGFWQREYDVL
VCTTIIETGLDISNANTLIVERADTLGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTET
AYDRLATIAQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGKPITTEEVKEVRIDLPVDAHIPPDYVASDRLRLEAYRKLAAAQDDSALASVVE
ELVDRYGPLPVEVGRLVSVAKLRLLAREYGITEIAVTGTTLKISPLLNLPDSKQLRLKRL
YPSAGYKAASGVVQLPLPRVEDSVGAERVRDVQLLQFVADLLLALDGKAQGAVDLTVATE
ATAHR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctctcgtccaccgctcgcgggactggccgcggtggccggtgccgatgccgcg
ctgcggaccgtcgccgacctggtcggcaccaccacggtcgacatggtggcgccggcggcg
gcccggtcgttcgtggccgcgacggtggccgggaagcggccggtcgtggtggtgacggcc
accgggcgcgaggccgacgacctgaccgtcgagctgaccgagatcctgggcgattcggtg
gcccagttcccgtcctgggagacgctgccgcacgagcggctctcgccgagcgccgacacc
gtcggccgcaggctcgcggtgctgcgcaggctcgcgcacccggacgatccggtcttcccg
gtgccgctgcgggtggtggtgaccaccgtgcggtcgctgatgcagccgatggcggcgggt
ctgggcgacatcgaaccgatcgtgctgcgcgagggcgccgaactggacttcgacgacctg
ctgacccggctggtcgagttcgcctacacccgggtcgacatggtcggcaagcgcggcgag
ttcgcggtgcgcggcggcatcctcgatctgttcccgcccaccgccgaccacccggtgcgc
gtcgagttctggggtgacgaggtcacccaggtgcgcgcgttcgcggtggccgaccagcgc
tcgctgcccgagatcgagatcgacaccgtggtcgccacgccctgccgggagctgctgctc
accgcgccggtgcgcgagcgcgccgcccaggtcgccgcggccaacgccgccgacgcggcg
ctggtggagatgctggacaagctcgccgagggcatccccgtggagggcatggaggcgctg
ctgccggtgctgcaacccggcgagctgaccctgctcaccgagcagctcgcggcgggcacg
cacgtgctgctgtgcgatccggagaagatccgcacccgtgccgccgacctggtgcgcacc
ggcgcggagttcctggaggcctcctggacggccgcctccttcggcgccgacgcgccgctg
ggcggcaacggcctggacctggccgcctcctcctaccgcgcgctgccgcagatccgcgag
gacgccgaccggcacgggctggcctggtggacgctgagcccgctggcctccggtgacccg
gccgaggtggtgctgccgctgcagcaggcgccgaccgcgcgcggctccgacgagctggtg
gcgaccatcttcgcgtcgctgcgcgcgcacgtcaccaccggcggccgcgccgtggtggtg
gtcgccggacacggcaccgcgcagcgcgtgctcgaacggctggccgacgcggaggtaccg
gccaccgcgctgacggcgggcgccgagcccgcaccgggcgtggtcggcgtgctgtgcggc
accctgcacgacggcgtggtcttcgccgacgccgccctggtggtggtcgccgaatcggat
ctgaccggcaaccgcgtcaccgcgcccggggagggcaagcggctgcccgccaagcgccgc
aaccaggtcgatccgctggcgctgagcgccggcgacatggtggtgcacgaccagcacggc
atcggccggttcgtggagatgatcgagcgcaccgtgggtggcgcgcgccgggagtacctg
gtcatcgagtacgcgccgagcaagcgcggccagccgggcgaccggctgttcgtgccgatg
gagtcgctggaccagctctcccgctacgtcggcggcgagatgccgagcctgtccaaactg
ggcgggtcggactgggccaacaccaaacgcaaggcgcgcaaggcggttcgcgagatcgcc
ggtgagctggtgcagctctacgccgcccgccaggccgcccccggccacgccttcggcccg
gacactccgtggcagaaggagatggaggacgccttcgccttcaccgagaccgtcgaccag
atgaccgccatcgccgaggtgaaggcggacatggagaagccggtgccgatggaccgcgtg
gtgtgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcc
gtccaggacggcaagcaggtggtcgtgctggtgccgaccacgctgctggcccagcagcat
ctgcagaccttcaccgagcgggtcgccggtttcccggtcacggtgaagggcctgtcccgc
ttcaccgacccggccgaatcgcgcgcggtgctcgagggcatggccgacggcagcgtcgac
atcgtcgtcggcacccaccgcctgctgcagaccggtgtgcgctggaaggacctcggcctg
gtcatcgtggacgaggagcagcgctttggcgtcgagcacaaggaacacatcaaggcgctg
cgcacccacgtcgacgtgctgaccatgtcggcgacgccgatcccgcgcaccctggagatg
agcctggccggtatccgcgagatgtcgaccatcctcaccccgcccgaggaacgtcacccg
gtgctcacctacgtcggcgcctacaacgacaagcaggtcaccgccgcgatccgccgtgag
ctgctgcgcgacggccaggtgttctacgtgcacaaccgagtgtcctcgatcgacaaggcg
gccaagcggattcgcgatctggtgccggaggcgcgggtggtggtcgcccacgggcagatg
aacgaggacaccctcgagcgcaccgtgcagggtttctggcagcgcgaatacgacgtgctg
gtctgcaccaccatcatcgagaccggcctggacatctccaacgccaacaccctcatcgtg
gagcgcgccgacaccctcggcctgtcccagctgcaccagctgcgcggccgggtcggccgg
tcgcgggagcgcggctacgcctacttcctctacccgccggagaagccgctcaccgagacc
gcctacgaccggctggccaccatcgcgcagaactccgatctgggcgcgggcatggccgtg
gcgatgaaggacctcgagatccgcggcgcgggcaacgtgctcggcgccgaacagtccggc
catgtcgccggtgtcgggttcgacctctacgtccggctggtcggcgaggcggtggaggcc
taccgggccgccgccgacggcaagccgatcaccaccgaggaggtcaaggaggtacgcatc
gacctgcccgtcgacgcgcacatcccgcccgactacgtcgccagcgaccggctgcggctg
gaggcctaccgcaaactggccgccgcgcaggatgattcggcgctggcgtcggtggtggag
gaactcgtcgaccgctacgggccgctgccggtggaggtcggcaggctggtgtcggtggcc
aagctgcggctgctggcccgcgaatacggcatcaccgagatcgcggtcaccgggaccacg
ctcaagatctccccgctgctgaacctgcccgactccaagcagctgcgcctcaagcggctc
tacccgagcgccggctacaaggcggccagcggtgtggtccagctgccgctgccgcgggtg
gaggacagcgtgggcgccgagcgggtgcgcgatgtgcagctgctccagttcgtcgccgat
ctgctgctggcactggacggcaaggcgcagggcgcggtggacctgacggtggcgaccgag
gccacggcgcaccgatga
DBGET
integrated database retrieval system
