Nothobranchius furzeri (turquoise killifish): 107379027
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Entry
107379027 CDS
T05163
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107379027
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107379027
09142 Cell motility
04820 Cytoskeleton in muscle cells
107379027
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107379027
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107379027
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107379027
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107379027
Hyaluronan
Extracellular matrix or blood plasma proteins
107379027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
107379027
NCBI-ProteinID:
XP_015805075
LinkDB
All DBs
Position
sgr05:complement(45298381..45344462)
Genome browser
AA seq
2804 aa
AA seq
DB search
MQEEKNLSRSSMKGACSLLLFLIGVTCLYGVTAQTTVCTQEAIADIVFLVDGSWSIGSDN
FQQIRQFLVTLVNSFDISPDHVRIGLVQYSTSPRTEFQLNSYRNKEDILKYIKSLPYRGG
GTNTGKGLDFMLKEHFVEASGSRAEQEVPQIAVVITDGKSQDEVESYAEELRKHGIILYA
IGIKDADEEELKQIANHPYAQHVHSVSEFAALHGISQNIVQTLCTTVEEAKRQHLQLPQE
CAKATVADIVFLVDGSTSIGMDSFQEVRRFLRSIVSGLDIGPDNVRVGLAQYSDETYQEF
LLKDHLDAQSLLAAVDSLPYRSGGTETGKAIDFLLSQYFTEEAGSRASQRVPQIAVVITD
GDSADDVDGPAQRLRQQGVIVFAIGVGQANMEELESIANRPPSRFLFTIDSYQALQKLKG
GLLQTVCVSMEDQRQALAEKFADIFFLVDGGITATQFQQVRNILVRLSNQLNFDASAYRL
GLAQYGQQVEVDFLLNKHQTKEETQAAVKRFRQLQLSPTDPRNLGAALLHASKFFFTEEA
GSRAHQGYQQFLVVLSGKDSSDPVYKPARLIKSAGVTVVGISLGASMKELRVISTSPYVY
QFNNTNAPLLRRTVETEEAETSLTGDCRAAKLADVVFIVDESGSIGVPNFQLVRTFLHSI
ISGLEVGPNRVRVGIVMYNTKPTAMVYLDTFNTKTELLNFIKILPYRGGGTNTGAALTFT
QENVFVPDKGSRKDNGVQQVAVVITDGESQDNVSQAAADLRRAGVTVYSVGVENANEVEL
QQMASYPPQKHVFIVDSFAKLKSLELSLQRSLCYNILRQAVSVSTRRTGIKEGCVQTDEA
DIFFLIDHSGSIHPSDFHDMKKFILEFIDTFRIGPQHVRIGVVKYADDPNLEFDLITYTD
AQTLGKAVEEILQIGGGTETGKALSFMSPLFKEAAVSRGHKVREHLVVITDGKSADKVKD
PAESLRKQGVVVYAIGVKEADEEELKEISGNPKRTFFVNNFDALNLIKDDIITDICTTDV
CKDIPGDLLFLIDSSGSIYPEDYKKMKDFMKSIISTSFIGENDVHVGVMQFGTTQQLEFS
LKQYFTKKDILVAVDGLRQIGGGTLTGRAISEVSQYFDSARGGRPDLRQRLIVITDGESQ
DQVKDPAEALRAKGVLVYAIGVVDANTTQLLEISGSPDRIYSERDFDALQDLERQVSLEL
CDPERDCKKTEQADIIFLVDGSTSITLPKFRSMQKFMQSMVNQTTVGNDLTRFGVILYAN
NPKSIFTLNQYSTRQEVFKAISGLKSQFGETFTGKALRYSLQFFDGEHGGRAELKVPQIL
MVITDGDATDHQSLVASSVALRDKGVQVFSIGVEGANVTQLEIMADQDTSKVFYVDNFAA
LETLHKNITQVLCNYTKPVCEKQQADLVFLIDQSGSIDTSDYTTMKNFTVEVVNSFKVSE
DLVRVGVAQFSTNFQHEFYLNQFYTEKEVSSHILSMNQVGGGTNIGLALDSIREYFEALH
GSRRSAGISQNLILITDGESQDDVEDAALRLRALGIEMFAIGVGDVHDLELLQITGDPGR
LFTVNNFGDLETIKQKVVDTICKSEVPLNPTDCSIDIAMGFDISHRTGAAGETLVSGQNK
LQAFLPEIAHYLSSVPRLCCTNEPISTSLGYRVAGRDGRRLHDFNFEAYSEDVVKKVMNL
RLDQPTYLNSALLRSFQEKFQSESRAGVKVLVIFSDGPDEDVMVLQRESERLRQSGVNAL
LIVALEGVRDATQLQMVEFGRGFNYKLPLSIGMPSVGSTVLKQIDAVSDRECCNVTCKCS
GHEGIRGSRGPPGPKGVPGQRGYPGFPGEEGVAGERGYPGPFGPPGVQGCSGLRGQKGNR
GLRGNRGEDGEDGLDGINGEQGMTGRDGARGERGNSGNPGIPGIQGEPGLKGQRGLRGDP
GEPGADNASPGPRGERGNPGLPGGPGQDGQPGGSGGAGNPGPDGRRGPSGEKGQTGEPGS
PGLQGSAGASGPQGPRGVRGQPGQKGIPGLPGPQGASGPVGELGQAGRRGANGPKGQPGD
PGDLGSSGPLGPRGSPGQDGRDGYGLAGHKGAKGDPGFPGFPGLMGEDGLQGPKGLPGRK
GNRGRGGNSGLTGESGISGDPGYPGHAGPRGPPGVRGMTECQLVTYIRDNCACSHGRSEC
PAYPTELVFGLDMSVDVTPVAFERQRSALLALLENINIAESNCPTGARVAVVGFSTFTKH
LIRFQDYRRKSQLIEAVQNIALERTSNKRHLGASMRFVGQNIFKRVRAGTMMRKVVVFFS
NGASEDDNEILTAVMEYRAQNIIPAVISLKEAPGVRVAMQVDDSGNSIFTVLTRQQNLAS
DLKKVQNCAICYDPCRYSEACSFIQDPIQPQQVDTDLVVVLDGSREMPADQFMGAQQLLG
SVVEQLAVSPQPNQAGNRARVAVVQQAKLEFNLQAYQNQNQMKRYLIQNMRQQGGYSMLG
RTLDLALKEVLMKAVRPRRTKVLLVLVATQTSFSDRAMLQYVSRKAKCEGVALFVVTVGD
RYNRTQVEELASLPVQQHLIHVGRLQVSEREYVQRFFRVFLSSLNKGINSYPPAAVKSIC
EELGGQQTGFTGLDQEQTGFTGLDQEQTGFTGLDQEQTGFTGQGFVDLGEIIRDEEQKTF
LEQTGQQTRIDQMDMIKITSPEESPRSISGVNINARCQLDSDSGTRCSDFVQMWFFDKHI
GSCSPFWFGGCGGNANRFHTEQQCFQTCGLQSSSMKLQAERSDFDAKGSCLLRQDPGSCQ
DYTMKWFFDTTQRECARFWYGGCDGNDNRFDTQEECEKMCVMKS
NT seq
8415 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagagaaaaacctgagtcgatccagtatgaagggggcgtgcagtctcctgctc
ttcctcatcggagtcacctgtttatatggagtcactgctcagaccacagtctgcactcaa
gaggccatagctgacatcgtcttcctggtggacggctcgtggagcattggctctgacaac
ttccagcagatccgtcagtttctggtcacactggtcaacagcttcgacatcagtcctgat
catgtaaggatcggcctggtccagtacagcaccagtccacgcacggagttccagctcaac
agctaccggaacaaggaggacatccttaaatacatcaagtcattgccttaccggggaggt
ggaaccaacacgggtaaagggctggactttatgctgaaggagcattttgtagaagcatcc
ggaagccgagctgagcaggaagtaccacagatcgctgtggtcatcactgacggcaaatca
caggatgaggtggagtcctacgccgaggagctgaggaaacacgggatcattctgtatgct
attggtatcaaagatgcagatgaagaggagctgaagcagattgcaaaccatccgtatgcc
cagcacgtccatagtgtgtcggagttcgctgcgctgcacggaatttctcagaacatcgtc
cagacgctgtgcaccacagtagaggaagcaaagaggcaacatctgcaactgcctcaagaa
tgtgccaaagccactgtggccgacatcgtcttcctggtggatggctccaccagcattggc
atggacagctttcaggaagttcggcggtttctcaggagtatcgtctcaggccttgacatc
ggcccagacaacgtccgtgtcggcttggctcagtacagcgatgaaacataccaagagttc
ctgctgaaggaccacttggatgcccagtctctgctggctgcggtcgacagccttccatat
cggtcaggaggcacagagacgggcaaagccattgacttcctgctgtctcagtacttcaca
gaggaggcggggagccgagccagtcagcgggtgcctcagattgctgtggtcatcaccgat
ggcgactcagcagatgatgtggatggcccggcccagcggcttcgacagcagggggtcatc
gtgtttgccatcggagtgggacaggccaacatggaggagctggaatccatcgctaaccga
ccaccatctcgcttcctgttcaccattgatagttaccaggccctgcagaagctgaaggga
ggtctgctgcagactgtctgcgtctccatggaggaccagaggcaagccttggctgaaaag
tttgcagacattttcttcctcgtggacggcggcatcacagcaactcagttccagcaggtc
agaaacatcctggtccgactgtccaatcagctgaactttgatgcttcagcctaccgcctg
ggtttggcccagtacgggcagcaggtggaggtggattttcttctcaataagcaccaaacc
aaggaagagactcaggctgctgtcaaacgcttccgccaactccaactttcaccaacagac
ccacgaaacctgggcgccgccttgctgcacgccagcaaattcttcttcactgaagaggca
ggaagtagagcacatcaaggctaccaacagttcctggtggtcctgagtgggaaggactcc
agcgatcccgtgtataagccggcacgtctgatcaaatcagctggagtaactgtggtggga
ataagccttggtgcgtcgatgaaagaactacgggtgatatccacgtcaccttacgtctac
cagttcaacaacaccaatgcgcctcttctccgcaggactgttgagacagaggaagcagag
acctctctaactggagactgtagagccgccaaactggccgacgttgtgttcattgttgat
gagtctggaagcattggagttcccaatttccagctggttcgaaccttcctacactccatc
atcagcggcctggaagtcggtccaaacagagtccgagtggggattgtcatgtacaacaca
aagcccacagcgatggtctacctggacacgttcaacaccaaaactgaactgctgaacttc
atcaagatcctgccttaccgtggaggaggtaccaacacaggagctgccctaaccttcacc
caggagaacgtcttcgtcccagataaaggaagcagaaaggataacggtgtccagcaggta
gcagtggtgatcacagatggagaatctcaggacaacgtgagccaagcagcagctgatctt
cgccgcgctggagtcactgtttattctgttggagtcgagaatgccaacgaggttgagctg
cagcagatggcttcttatcctccacagaaacacgtcttcatcgtggacagctttgctaaa
ctcaagtctctggagctgagccttcagaggagcctctgctacaacatccttcgccaggca
gtctcagtcagtaccaggaggaccgggatcaaagaaggctgcgtacaaacagatgaagca
gacatcttcttcctcatcgaccactcaggaagcattcacccatcagacttccacgacatg
aagaagttcattcttgaattcatcgacacctttcgtattggtccccagcacgttcgcata
ggggttgtcaaatatgcagatgacccaaacctggagtttgatctgatcacctacacagat
gcgcagacgctaggaaaagctgtggaggaaatcctgcagatcggaggtggtacagagaca
gggaaagctctgtcattcatgagccctctgttcaaggaagctgcagtttctcgaggacac
aaagtccgagagcatctggtggttatcactgatgggaagtctgccgacaaggtcaaggat
ccggctgagagtctaaggaagcaaggtgtggtggtctatgccatcggtgtgaaggaagct
gatgaagaggaactaaaggaaatatcaggaaaccccaagaggactttctttgtcaacaac
tttgatgccctgaatctgatcaaggacgacatcatcaccgatatctgtacaacagatgtt
tgcaaggacataccaggtgacctcctgttcctcatcgatagttctggaagcatctaccca
gaagactacaaaaaaatgaaagactttatgaagtccatcatcagtacatcttttataggg
gagaacgatgttcatgttggtgtcatgcagtttggtaccacccagcagctggagttctct
ctcaaacaatactttaccaagaaggacattctggtggcggtggatggccttcgtcagata
ggtggaggaacactgacaggccgagctatcagcgaggtgtctcaatacttcgattcagcc
agaggggggcgcccagatctacgacagagactcatagttatcaccgatggcgaatcccaa
gaccaggtcaaagatcctgctgaggctttgagggccaagggggtgctggtctatgccatt
ggagtggtggatgccaacactacccagctgctggagatcagtggatcacctgacaggatt
tactctgagagggactttgacgctttgcaggacctggagagacaggtgtccttggaactg
tgtgatccagagagagactgtaagaagacagaacaagcagacattatcttcctggtggat
ggctccaccagtataaccctacccaagttcagaagcatgcagaagtttatgcagtccatg
gtgaaccagaccacggttggcaatgacctgactcgcttcggtgtcatcctttacgccaac
aaccccaagtctatcttcactctgaaccagtacagcaccagacaggaggtttttaaagca
atatcaggactgaagtctcagtttggagaaaccttcactggaaaggccctgaggtactcg
ctccagttctttgatggtgagcatggaggtcgggcagagctaaaagtgcctcagatccta
atggtgatcacagatggagatgctacagaccatcaaagtctggtggcgtcatcggtggca
ctgagggacaaaggagttcaggtcttcagcattggagtggaaggagccaacgtgacgcag
ctggagatcatggctgatcaggacacgtccaaagttttctatgtggacaactttgctgcc
ctggaaacgctccacaagaacatcacccaggtgctctgcaactacaccaagccagtttgt
gagaaacagcaggctgacctggttttcctcatcgaccaatctgggagcatcgatacgtcc
gactacaccaccatgaagaacttcacagtggaagtggtgaacagctttaaagtcagtgag
gatttagtgcgtgttggagtggcccagttcagcaccaattttcagcacgagttctaccta
aaccagttctacactgagaaggaggtgtccagccacatcctgagtatgaatcaggtgggt
ggaggcaccaacatcggactcgccctggactccatccgggaatactttgaggctttgcac
ggcagccgtaggtctgcaggaatctcccagaatctgattctgatcacagacggagaatca
caagacgacgtagaagatgcagctctgcgtctcagagccctgggaatcgagatgtttgcc
atcggcgttggagatgtgcacgatctggagctgctgcagatcactggtgatccaggtcgg
ctgtttactgtcaacaactttggcgacttggagaccatcaaacagaaggtggttgacacc
atctgcaagtccgaagtccctctcaatccaacagattgctccattgacatcgccatggga
tttgacatctctcaccggactggagctgctggtgagacgctggtcagcggccagaacaag
ctgcaggccttcctcccagagattgcccactacctctcctcggtaccacgcctgtgctgc
accaacgagcccatcagcaccagcttaggttaccgtgtggcaggccgggacggacgccgc
ctgcatgacttcaactttgaggcatacagcgaggatgtggtgaagaaggtcatgaacctg
aggttggaccagcctacttacctcaactcggccctgcttagatccttccaggagaagttc
cagtccgagtctagagctggtgtgaaggttctggtgatcttctcagatggacccgatgaa
gacgtgatggtcctacagagagaatcagaacggctgcgacagtctggagtcaacgctctg
ctcattgttgctctggagggcgtccgtgacgccactcagctgcagatggttgagttcgga
cggggatttaactacaaacttcctctgagcatcggcatgccgagcgtcggcagcacggtc
ctcaaacagattgatgccgtgtcggaccgggaatgctgcaacgtcacgtgcaaatgttca
ggacacgaaggcatccgtggctctcgggggcctccaggaccaaagggtgtgccgggacag
aggggataccctggattccccggagaggagggcgttgctggtgagaggggctatcctgga
ccttttggacctcctggagtccaaggctgttctggactcagaggacagaaggggaaccga
ggtcttcgggggaaccggggtgaagatggagaggacggattggatggaatcaatggagaa
cagggcatgacgggtcgagatggagctcgaggagaacgaggaaactcaggaaacccagga
atcccaggtatccaaggggagccaggtctgaaaggacaacgaggactgagaggagatccg
ggagaaccaggagctgataacgcctctccaggaccccgaggagaacgtggcaacccaggt
ttaccaggaggtcctggacaggatggccagccgggcgggagcggcggcgccggaaacccg
ggtccagacggaagaagaggtccttctggtgagaagggacagaccggagagcccggttct
cctggactacaaggcagcgcaggtgcttctggtcctcagggtcccagaggggtcagaggt
caaccaggacagaaaggaatcccaggccttcctggacctcagggtgcatctggaccagta
ggagaactgggtcaagcgggccgccgcggtgccaatgggccaaagggtcaaccaggagat
ccaggtgacctgggttcttcaggaccactggggcctagaggaagcccgggtcaggatggc
agagacggttatggactggcaggacacaaaggagcgaagggagatccgggtttccctgga
ttcccaggtctcatgggggaggatgggctgcagggacccaaaggactaccgggtcgcaaa
gggaaccggggtcgagggggtaactcgggcctaaccggagaatcgggcatttctggagat
cctggatatccgggtcacgcgggtcctcgaggtcctcctggagtcagaggcatgactgag
tgtcagctggtcacctacatcagggacaactgtgcttgttcccacggtcgctccgagtgc
ccggcctaccccactgagctggtcttcgggctggacatgtctgtcgatgtgacacctgtg
gcctttgaacggcagcgttccgctcttctggctctgttggagaacatcaacattgcagaa
agcaactgtccaacaggtgcccgggtcgctgtggtgggattcagcaccttcaccaaacac
ctgatccgcttccaggattaccgccgcaaatcccagctgatcgaggccgtgcagaacatc
gccctggagaggacgtccaacaaacggcacctcggtgcttcgatgcgctttgtgggccag
aacatattcaaacgtgtgcgagcaggaacgatgatgagaaaagtggtggttttcttctct
aatggagcttctgaggatgataatgagatattaactgccgttatggagtaccgggcccag
aacatcatcccagctgtcatctctctaaaagaggctcctggtgttcgtgtagccatgcag
gtggatgactccgggaactctatcttcactgttctgacaaggcagcagaacctggcctct
gatctgaagaaagtccagaactgtgccatctgttatgatccttgtaggtactcagaggca
tgctccttcatccaggacccgatacagcctcagcaggtggacacagacctggtcgtggtt
ctggacggctccagggagatgccggcggaccagtttatgggagctcagcagctactgggc
tctgttgtggagcagttagctgtgagtcctcagcccaaccaagctggaaaccgggcccga
gtggctgtggtacagcaggccaagctggagttcaacctgcaggcctaccagaaccagaac
cagatgaagaggtacctgatccagaacatgcggcagcagggtggctactcaatgctggga
cggactctagacttggccctgaaggaggttctgatgaaggcggtccgcccacgcaggacg
aaggttttactggtgctggtggccacccagacatccttcagtgatcgggccatgctacag
tatgtgtcccggaaggccaagtgtgagggcgtggctctatttgtggtgacggtcggtgac
cgctacaaccggacccaggtggaggagctggccagtctgccagtccaacagcatctgatc
cacgtgggccggctgcaggtcagcgagcgggaatacgtccagcgtttcttcagagtcttc
ctctcctccctgaacaagggaataaattcatatcctcctgctgctgtcaaatccatctgt
gaggagctgggtggccaacagactggtttcactgggttggaccaagaacagactggcttc
actgggttggaccaagaacagactggcttcactgggttggaccaagaacagactggcttc
actggtcagggttttgtggatcttggtgaaatcatcagagatgaagagcagaagacattc
ttggagcagacaggtcagcagactcggatagaccagatggacatgatcaagattacaagt
ccagaagagagcccaagatccatttctggagtaaacataaatgcccggtgtcagctggat
tctgattctggtaccaggtgttctgactttgtccaaatgtggttctttgacaaacacatt
gggtcatgctctccgttctggtttggtggctgtggcggcaacgccaaccgctttcacaca
gagcaacagtgtttccagacctgtggactccagagttccagcatgaagctgcaggcggag
cgcagcgacttcgacgccaaaggttcctgtctcctccgtcaggaccccggcagctgccag
gactacaccatgaagtggttctttgacacaacgcagagggaatgcgctcggttctggtac
ggcggctgtgacggcaacgacaaccgctttgatacgcaagaggagtgtgagaagatgtgt
gtaatgaagagttga
DBGET
integrated database retrieval system
