Nothobranchius furzeri (turquoise killifish): 107379461
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Entry
107379461 CDS
T05163
Symbol
chd4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107379461 (chd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nfu03036
]
107379461 (chd4)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107379461 (chd4)
Chromatin remodeling factors
NuRD complex
107379461 (chd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
HDA2-3
ResIII
DEAD
PHD_2
AAA_22
zf-PHD-like
Motif
Other DBs
NCBI-GeneID:
107379461
NCBI-ProteinID:
XP_015805709
UniProt:
A0A8C6K566
LinkDB
All DBs
Position
sgr05:complement(61280868..61324876)
Genome browser
AA seq
1964 aa
AA seq
DB search
MSCSEDEREDFGADDEHSLLHDEDEPEDAVSDAEEAPKSKKKKKAKKSNRESRSSKRQRP
IREELPVSSPEHLIGLEAAERDVNEGGMRSESEGSDYAPGRKKKKRSSSAKDKKKGGGGG
EKGGSKSKRKDPEPDDDDDDDDDCQPKSSTQLLEAWGMKDIDHVFSQEDYSSLTNYKAFS
QFVRPLIAAKNPKIPVSKMMTLMMAKWREFSTNNPLKGCATANAALAAANVAAAVENMVV
AGTDGGAEIPPAAPAPVPAAAAAPAPTPAAPPAAPAPPLRKAKTKEGKGPNARKRSKPAS
KPPAKQKPKKVAPLKIKLGGLNSKRKRSSSDEDEPDVDSDFDDGSFSVSDGSNRSSRSKK
KSKSAKKKKKVETEDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPE
GKWSCPHCEKEGIQWEARDDLSEAEGEDDDDRRDEGLEEEDDHHIEFCRVCKDGGELLCC
DTCPSSYHIHCLNPPLPEIPNGEWICPRCKCPPMKGKVQKVLLWRWGDPPAPMPVPRPPD
LPADAPDPPPLVGRREREFFVKWCNMSYWHCSWVQELQLELNCQVMFRNYQRKTDMDDPP
PVDFGGEGDDDKSTKRKNKDPLFVHMEEEFCRFGVKLEWLMIHRILNHSVDKKNNVHYLI
KWRDLAYDQSTWESEDMDIPEYDTYKQIYWNHRELMTGEEGKPGKKLKKTVKVKKAERPP
ANPVVDPTIKFDRQPDYLDSTGGTLHPYQLEGLNWLRFSWAQATDTILADEMGLGKTVQT
AVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEF
SCEGNATRGGKKASKMKKDSTIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNN
QSKFFRQLNNYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIAKED
QIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFEALNTRG
GGNQVSLLNVVMDLKKCCNHPYLFPAAATEAPKLPNGMYEGAALTKASGKLMLLQKMMKK
LKEGGHRVLVFSQMTKMLDLLEDFLENEGYKYERIDGGVTGNMRQEAIDRFNAPGAQQFA
FLLSTRAGGLGINLASADTVIIFDSDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTKASVE
ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEVGDGDNKEDDS
SVIHYDDPAIERLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDDEEEELEREVIKQ
EESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRTRKPVNYNDGSQEDRGIRQDWQEDQSD
NQSDYSVASEEGDEDFDERAEANARRPNRKGLRNDRDKPLPPLLARVGGNIEVLGFNARQ
RKAFLNAVMRYGMPPQDAFTNQWLVRDLRGKPEKEFKAYVSLFMRHLCEPGADGAETFAD
GVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMAELEENKRAAALAAGEDPK
TPSTGTPADTQPNTPIPEDFSKSDERDDMKKEGEDSKAKKDDPEIIEIPDESEKSPVVNK
KDAAVEKEDKEDGEEGKEKEAEDLSREKEEKSSAAMVASVNNKGGGSDGRMDSEDKCKAE
DGKYEKMDTSPPEERKDPKEEKDGVKTEEPGKLQNGENAKDGGAAAVNISEEKKKATKQR
FMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIIQHGYARWQDVQND
VRFAIINEPFKGEMSRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMTEDPAHPS
MALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPATI
ARIPPVAVRLQMSERNILSRLASRGPEVGIQNPSQTSQQMQVPR
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgcagcgaggatgagagggaggactttggagccgatgacgagcactcacttctt
cacgacgaggacgagccggaggatgctgtctctgacgcagaagaggcacccaagtcaaag
aagaagaagaaagccaaaaagagcaaccgggagagcaggagcagcaagaggcagagaccc
atccgggaggaattgccagtcagctccccagagcacctgattggattggaggcagcagag
agggatgtaaatgagggaggtatgcggtcagagagtgaaggaagtgattatgcacctggt
agaaaaaagaaaaaacgctccagctctgccaaagacaagaagaaaggaggagggggagga
gagaaaggaggctcaaagagcaaacgtaaagatccagaaccggatgatgacgacgatgat
gacgacgattgccagcctaaaagctccacgcagctgctggaggcctggggcatgaaagac
attgaccacgtcttttctcaggaagactacagctccctcacgaactacaaggcattcagt
cagtttgtcaggcctttaattgctgcaaagaaccccaaaattcctgtgtccaaaatgatg
actttaatgatggctaaatggagggaattcagcacaaataacccactcaagggttgcgcc
actgctaatgcagccttggcagctgccaatgtggctgcagctgtggagaacatggtggtt
gcagggaccgatggaggtgcagagattcctcctgctgctcctgctccagttcctgccgcc
gctgcagctcctgctccaacaccagctgcacctcctgctgctccagcacctccgctccgc
aaagccaagaccaaagagggaaaaggcccaaatgctcgcaagaggtcaaagcctgcgtct
aaacctcctgctaaacagaaacccaagaaggtggctccactcaaaatcaaactgggaggc
ctcaacagcaagaggaagcgctcatctagcgatgaagatgaacctgatgtcgacagtgac
ttcgatgacgggagtttctctgtttctgatggctccaaccgcagcagccgttctaagaag
aaatctaagagtgccaagaaaaagaagaaagtggaaacagaagatggtgacgggtatgag
acggaccatcaggactactgtgaggtgtgccagcagggcggggagatcattttgtgtgac
acctgccctcgagcctatcacatggtctgtctggacccagacatggagaaagcacctgag
ggcaagtggagttgcccacactgtgagaaggaggggatccagtgggaggccagggatgat
ctgtccgaggccgaaggggaggacgatgacgacaggagagatgaagggttggaggaggaa
gacgaccatcacatcgagttttgccgcgtgtgcaaggacggtggagagttgctgtgttgt
gacacctgcccctcctcctaccacatccactgccttaatcctcctctccctgagatcccc
aacggggagtggatctgcccccgctgcaagtgtccaccgatgaagggaaaagtgcagaag
gttttattgtggcgctggggggatccaccagcccccatgcctgtccctcggcctcctgac
cttcctgctgatgctcctgatcctcctcctttggtgggccgcagggagagggagttcttt
gtcaaatggtgcaatatgtcctactggcactgctcctgggtgcaggagctacagttggag
ctgaactgccaggtgatgtttcgtaactaccagaggaagaccgacatggacgatcctcct
cctgtagactttggaggtgagggcgatgatgacaaaagcaccaagaggaagaacaaagat
cccctctttgtccacatggaggaggagttttgccggtttggagtcaagctggagtggctg
atgatccaccgcatccttaaccacagtgttgataagaagaacaatgtgcattatctaata
aagtggagagatctggcatatgaccagtccacctgggagagtgaagacatggacattcct
gagtatgacacatacaagcagatctactggaatcacagagagctgatgacgggggaggag
gggaaacctggtaagaagcttaagaagaccgtcaaagtgaaaaaggcagagcggccacct
gctaacccagttgtagatcccaccataaagtttgatcggcagccagactacctggacagt
acaggaggcacgctgcatccctaccagctggaggggctgaactggctgaggttttcttgg
gctcaggccacggacacaatcctggctgatgagatgggtttgggcaagactgtacagaca
gctgtcttcctgtactcgttgtacaaggagggccactccaaaggccccttcctggtcagt
gctcctctgtccaccatcatcaactgggagagagagtttgagatgtgggctcctgacatg
tatgtggtcacttatgttggtgacaaagacagcagagcggttatccgagaaaatgagttc
tcctgcgagggcaacgccaccagaggagggaaaaaggcctccaagatgaagaaagactca
acaattaagtttcacgttctgctgacatcctatgagttgattaccattgaccaggctgtg
ctgggctccattgaatgggcctgtttggttgttgatgaggcgcacagactcaagaacaac
caatccaagttctttaggcagttgaacaactattcactgcaacacaaacttctgctcact
ggaacccctcttcagaacaacctggaggagctttttcacctgctgaacttcttgactcca
gagagattcaataaccttgaagggtttctggaggagtttgcagacatcgccaaagaggac
caaatcaagaaactccatgacatgttgggaccccacatgctcaggaggctgaaggccgat
gtgttcaaacacatgccttctaaaacagaactcatcgttcgagtggagctgagccccatg
cagaagaaatactacaagtttattctaacacgtaacttcgaggccctgaacactcgagga
ggcggaaaccaagtgtctttgctaaacgttgtcatggaccttaaaaaatgctgcaatcac
ccctacctcttccctgctgctgccacagaggcaccaaaactcccaaatggcatgtatgaa
ggtgccgccctgaccaaagcttcagggaagctgatgctgctccagaagatgatgaagaag
ctgaaggaaggaggccacagggttctggttttctcccaaatgaccaaaatgcttgaccta
ctggaggacttcctggagaacgagggatacaaatatgagaggattgatggaggagtcact
ggcaacatgagacaggaggctattgatcgctttaatgctcctggtgctcagcagtttgcg
ttcctcctctccactcgggccggtggtttgggcattaatctggcctctgctgacacagtt
atcatcttcgactctgactggaaccctcacaatgacatccaggcgttcagcagagctcat
cgtatcggccagaacaggaaggtgatgatctatcgctttgtcactaaagcttctgttgaa
gagaggatcacacaggtggcaaagaagaagatgatgctcactcaccttgtggtgagaccc
ggcctcggctctaagaccggctccatgtccaagcaggaactcgatgacatccttaagttt
ggaacagaagagctgttcaaggatgaggtcggcgatggggacaacaaagaggatgacagc
agcgtgatccactatgacgatccggcgattgagcgtttgctggacagaaaccaggacgcc
acagaggacactgagctccagagcatgaatgagtacctcagttcctttaaggtggcccag
tatgtggtcaaagatgaagacgacgaggaggaggagttagaaagggaggtgatcaagcag
gaggagagcgttgatcctgactactgggagaagctgcttcggcatcactatgagcagcag
caagaggaccttgcacgcaatttaggcaaaggcaaaagaactagaaaaccggtcaactac
aatgacggttcccaggaggatcgaggtatacgacaggactggcaggaggatcagtctgat
aaccagtctgattactcggtggcttcagaggagggagacgaggactttgatgaacgtgct
gaagcgaacgcgcgcaggcctaacaggaaagggctgaggaacgaccgggacaaacctctt
cctccgctgctcgccagggttggaggtaacattgaggttttgggcttcaacgctcgtcag
aggaaggctttcctcaacgcggttatgcgttatgggatgccgccacaggatgctttcacc
aaccagtggctggtcagggatctgcgagggaagcctgagaaggagttcaaagcctatgtg
tctctgttcatgcgccacctctgtgagccgggagccgacggagctgagacctttgcagat
ggcgtcccgcgtgagggtctgtccaggcaacatgtgcttactcgcatcggtgtgatgtca
ctgataaggaagaaggtgcaggagtttgagcacgtgaacggtcagtggtcgatgccctgg
atggcggagctggaggagaacaaacgggcggcagctttagctgcaggcgaagacccgaaa
actccttcaactgggactcctgcagacacgcagcccaacacccccatcccagaagatttt
tctaaatcagatgagcgagatgacatgaagaaagagggagaggacagcaaagctaagaaa
gatgatccagagattattgaaatcccagatgagtctgaaaagtcccccgttgttaacaag
aaagatgctgctgtggagaaggaagacaaggaggatggagaggaaggaaaggagaaggaa
gctgaagacctgagcagagagaaagaagagaagtcttcagcagcgatggttgcttctgta
aacaataaggggggaggttcagatggaaggatggattcagaggacaagtgtaaagctgag
gacggcaaatacgagaagatggacacctcaccaccagaggagagaaaagatccaaaggag
gagaaggacggcgtgaaaacagaggagcccggaaagctgcagaatggagagaatgccaaa
gatggaggagcagctgcggttaacatcagcgaagagaagaagaaagccaccaagcagaga
ttcatgttcaacatcgcagacgggggcttcacagagctccactccctgtggcagaacgaa
gagagggccgccactgtcacgaagaagacctatgagatctggcaccgtcgtcatgactac
tggctgttggctggaatcatacaacacgggtacgctcgatggcaggatgtgcagaacgat
gtgaggtttgctattatcaacgagcccttcaaaggagagatgagcagaggaaacttcctg
gaaatcaagaacaagtttctggctcgcaggttcaagttgctggagcaggctttggtgatc
gaggagcagctgcgtagggcggcctacctgaacatgacagaggacccggcccacccctcc
atggccctcaacactcgcttcagtgaggtagagtgtctcgccgagtcccatcagcacctc
agcaaggagtccatgtctggaaacaagcctgccaacgcggtgctccataaagtcctcaaa
cagctggaggaactgctgagtgacatgaaggctgacgtcactcgtctcccagcaaccatc
gccaggatcccccccgtggccgtacggctgcagatgtctgagaggaacatcctcagccga
ttggccagccggggtcccgaggtcgggatccagaatccatcacaaacctcacagcaaatg
caggtgccgcgctga
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integrated database retrieval system