Nothobranchius furzeri (turquoise killifish): 107381023
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Entry
107381023 CDS
T05163
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107381023 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107381023 (lig4)
Enzymes [BR:
nfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107381023 (lig4)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107381023 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
ATG17_like
Motif
Other DBs
NCBI-GeneID:
107381023
NCBI-ProteinID:
XP_015807974
UniProt:
A0A1A8UEV8
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Position
sgr06:62456165..62463178
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AA seq
909 aa
AA seq
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MEGTSKHGAPGEPTVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHSALHK
ENPQTTDSFYSAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFASMAYFVLKNRCASQGNLSIKEVNDFLDSVAINNASKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIELFSAFKPMLAAVANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPHIHNAFKRDIVSCILDGEMMAYNPTAETFMQKGSKFDIKKLM
NDSELQTCFCVFDVLLANNRKLGKETLKHRHEILQTIFTPINGRIHVVPKTEVRTMQQVV
GALNDAIDSREEGIMVKDPLSLYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAIAEAPKPGEKPSVFHSFCRVGSGYTMKELYDLGLKLAKHWKVYKKKDPP
ASILCGTEKPEVYIEPCNSVIVQVKAAEIVASDVYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLNIDYNEPQKKKRKLPAKTKKVVGVIDHFKPQDLTGVSKET
DMFEDVEFCILNGSEDHPKSELEKGVARCGGFVVQNPGRDTYCVIAGVENMRVKNLISSN
QHDVVWASWLVECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDIYGDSYFVDTDEQQLRE
VFGRISNVNAAGVNAAQVEERYGWDDLPTSMFRPFTVYLDVLANIGDPKSTVPVTSLDIR
ALEVRYHGGTVVQKLEEGVSHVIVEGEERLLDLRTLRRSFKKKFKIVRDKWVTDSVTAGH
LVDDTDYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacttccaaacatggtgctccaggtgagccaactgttgctgctcaggtcccg
tttcttcacttgtgcaccacgttggaaaagatccagaaatccaaacttcgtccagataaa
tccaagatcctgggggatttcattgaatcgtggcgaaagtttcattctgccctccacaaa
gaaaacccccaaactacagactccttctactctgctatgcgcctcatcgttcccccgttt
gagcgagagcgaatggcgtatggaataaaagaaagcatgctagctaagctttatatcgat
gttttaggccttccaaagaatggcccagaggccaataagctgctgaactatcgcgctcca
accacatcccaaggagaagctggagactttgccagcatggcatactttgtgttgaagaac
cgatgcgcgagccaaggaaatcttagcatcaaagaggtcaacgacttcctggactcagtt
gcaataaacaatgccagcaagcaaaaggaccttgttaaaaagagtctcctgcacctcatc
acccaaagctctgctcttgagcaaaagtggctcattagaatgattctgaaagatatgaag
cttggagtcagtaaggaaacggttctccaagtcttccacccggatgctgcagagctctac
aacgtcaacacggacttgaacaaggtgtgccagcagctccacaacccttccgtgtcctta
agtgaagtttctatcgaacttttctccgcctttaagccgatgttggcagctgtggctaat
attcgcaacgttgagaagcaaatgggcaacagccctttttacattgagacaaagctggat
ggggaacgtattcagctgcacaaagacggagacgtgtacaagtacttcagcagaaacgct
tttgaatacacgcagcagtttggtggctcgcccctagaaggatcgctgactcctcatatt
cataacgctttcaaacgcgacattgtgagctgcatcctggatggagagatgatggcgtac
aacccaacggcggagacgttcatgcagaaagggagcaagttcgacatcaagaagctgatg
aacgactcagagttgcagacatgcttctgcgtgtttgacgtgttgttggcgaataaccga
aagcttggcaaagaaacgctaaaacaccgccatgagatccttcagaccattttcacaccg
atcaatggaaggattcatgtggtgccgaagactgaagtccgaaccatgcagcaggtggtc
ggcgcacttaatgatgccattgacagcagagaagagggaatcatggtaaaggatcctctg
tccctctacaagcctgataaacgaggagaaggctggctaaaaataaaaccagagtacgtg
gacggcttgatggacgagctggacctactgattgttggcggctactggggaaaaggaaga
cgaggtgggatgatgtctcatttcttatgtgccattgctgaagccccaaagcctggcgag
aagccatcagttttccattccttctgtcgcgttggctcaggctacaccatgaaagagttg
tatgaccttggtttgaagcttgccaagcactggaaggtctacaagaaaaaggaccctcca
gcatccatcctgtgtgggacagagaaaccagaggtttacatcgaaccgtgcaactcggtc
atcgtccaggttaaggcagctgagattgttgcaagtgacgtgtataaaaccaactgcacg
ctgcgcttccccagaattgaaaagatccgcgacgataaggaatggcatcagtgtatgacc
ctggcagagctagatcagttccgtagcaaggcgtctgggaaactggcctcacggcacctt
aacattgactataatgaaccacaaaaaaagaagaggaagctgccagccaaaaccaagaag
gtggttggtgtaattgaccacttcaagccccaagacctgaccggggtttccaaggagacc
gatatgtttgaagatgtagaattctgcatcctgaacggctctgaagatcatccgaagtct
gaactggaaaaaggcgtagccaggtgtggcggtttcgtggttcaaaacccaggacgggac
acctactgcgtgattgccggcgtggagaacatgcgcgtgaagaatctgatttcatccaac
cagcatgatgtcgtttgggcctcttggctggtggagtgccttgaccagaaggaagtggtg
ccatggcaacctcgccacatgattcacatgtcaccctcaacacgggaacactttgccaag
gagtatgacatctatggtgacagctacttcgtggatactgatgaacaacagctgcgtgag
gtgttcggccgaataagcaacgtcaatgcggcaggggtgaacgcagctcaggtagaggag
cgttatggttgggatgaccttcccacgagcatgttcagaccattcacagtctacctggat
gttctcgccaacatcggcgatccaaaaagcaccgtacccgtcaccagtctagacatcaga
gcactggaggttcgctaccatggaggtacggtggtacagaagttagaagaaggagtttca
catgtgattgtggaaggagaggagagacttctggatctgaggaccctgcggcgctctttt
aagaagaagtttaaaatcgtgagagacaagtgggtgactgattcagtcacagcagggcat
ctggtagacgatactgactacttggtttga
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