Nothobranchius furzeri (turquoise killifish): 107383842
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Entry
107383842 CDS
T05163
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03013
Nucleocytoplasmic transport
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107383842 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
107383842 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107383842 (thoc1)
03041 Spliceosome [BR:
nfu03041
]
107383842 (thoc1)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
107383842 (thoc1)
Spliceosome [BR:
nfu03041
]
Complex C
Other components
EJC/TREX
107383842 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107383842 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
107383842
NCBI-ProteinID:
XP_015812160
UniProt:
A0A1A8AWF2
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Position
sgr09:complement(32504387..32509244)
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AA seq
654 aa
AA seq
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MSLSSFNFVDAKEKFSAASTQALAGKTCKPLIAVFNQLPGNETEKKTTLDQALRSVLGDQ
ILEQKSCCDDYLSLIYQSINAVTEGICSATTPFVLLGDVLDCLPLDLCDKIFSFVEENVS
TWKSSSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKHADEKEDGMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWTL
QDYFRNPLQCYEKISWITFVKYSDETLAVFKSYKLDDMQASKRKLEELRASDGEQVYFAK
FLTSEKLMDLQLSDSNFRRHILVQYLILFQYLKGQVKFKSSSCALNDDQTTWIEETTKLV
FQLLRETPPDGDKFATMVEHMLSTEENWNAWKNEGCPSFVKERTVDEKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNHDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDTMVCKLAKELPKDLPSE
EIKTGEEDDDDNGDNLLKESNDSPSIQSKLVTNQQMDDIAAKLGAQWKTLASHLEMKAAE
LREIETDSEDVEMQAKLLLVSWQDREGTQATVENLVSALNAAGFSQIADGLSEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtcctcatttaattttgtcgacgctaaagagaaattttcggctgcaagcaca
caagcactagctggtaaaacctgcaaacccctaatcgccgtgtttaaccaactccccggc
aatgagacggaaaagaagaccacactggatcaggctttgaggagtgttcttggtgaccag
attcttgagcagaaatcatgctgtgatgactatctgtctctaatctaccagagcatcaat
gctgttactgagggtatctgttctgctacgactccttttgtcctgctgggagacgttctg
gattgccttccccttgacttgtgtgacaaaatattctcttttgttgaagaaaatgtctct
acctggaaatcgagctctttttacacagcaggaaagaactatttgttgagaatgtgtaac
gatcttttaaggaggctgtcgaaatcccagaatacagtattctgtgggagaatccagctt
ttcctggcacgtctctttcctctgtctgaaaaatccggtctcaatctacaaagccagttt
aatctggacaacataaccgtgttcaataaaaatgaacaagaaagcactcttggtcagaag
cacgctgatgaaaaggaagacggcatggaagtggaggaaggagaaatgggggaggatgac
gccccggcaccgtgttctattccgattgactacaacctgtacagaaagttctggacattg
caggactactttagaaatccgttgcagtgctatgaaaaaatctcatggattacttttgtt
aagtactccgatgagactcttgctgtgttcaaaagctacaaactggatgacatgcaggcg
tcaaagaggaagttggaggagctgcgagcgtctgatggtgaacaggtttactttgccaag
tttctcacgagcgaaaagctgatggacttgcagctcagcgacagcaacttccggagacac
atactggtgcagtacctgatcctgttccagtacttgaagggtcaggtcaaattcaaaagc
tcaagctgtgctctgaatgatgaccagactacatggattgaggagacgactaagctggtg
tttcagctcctcagagaaactccccctgatggagataagtttgccaccatggttgagcac
atgctcagcacggaggaaaactggaatgcctggaaaaatgagggatgtccgagctttgtg
aaagaaagaacggtagacgaaaaacctaaaaggcccaccaggaagagacaagctccagag
gacttccttggaaaagggccggaccgaaagattttcatgggaaatgacgagctaacccga
ttgtggaacctgaaccatgacaacatggaggcgtgcaagtcagacagcagagagtttatg
ccgtcactggatgagttttttgctgaagccatcgaacaggctgacccagctaacatggtg
gaggaggagtacaaggttgtgcgaaacccgaactacggctggcgggccttgaggctgctg
tccaggaggagtccacacttctttcagccgactaaccagaagttcaagagcctcgcagac
tacttggacactatggtttgcaaactggctaaagaactgccgaaggatctcccttcagag
gaaattaaaacaggcgaagaggatgacgacgataatggagacaatcttctaaaagaaagc
aacgacagtcccagcattcagagcaaacttgtaacgaaccagcagatggacgacattgcg
gctaaactgggtgcccagtggaagacgctggcctctcatttggagatgaaggcagcagag
ttgcgtgaaatcgagacggacagtgaagatgttgagatgcaggccaaactcctgctggtt
tcatggcaggaccgagagggcacacaagctactgtggagaatttggtctccgctctaaat
gcagctggtttttctcagatcgcagacggcctcagtgaggcttaa
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