Nothobranchius furzeri (turquoise killifish): 107392833
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Entry
107392833 CDS
T05163
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03013
Nucleocytoplasmic transport
nfu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107392833 (upf1)
03015 mRNA surveillance pathway
107392833 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107392833 (upf1)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107392833 (upf1)
5.6.2.5 RNA 5'-3' helicase
107392833 (upf1)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107392833 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107392833 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
107392833
NCBI-ProteinID:
XP_015826348
LinkDB
All DBs
Position
sgr17:complement(14497327..14518508)
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AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELIGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKLGRGGRQRVRGSMGQGNGPNSQA
SQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gccgagctcatcggagccgacacacagggctccgagtatgacttcaccgacttcacgctt
cctagccagacccaaactcaaggccaaacgcagagccagctggacagccaggtgaatggt
ccagatgaaggtcttcataacggaggggttgatgactctgtggccaaaaccagccagttg
ttgggagagctgaactttgaagaggatgaagaagacacttattacaccaaagaccttcct
gtacacgcatgcagctattgtggtatccatgacccagcctgtgttgtgtactgtaacacc
agcaagaagtggttctgtaatggccgtggcaacacatctggaagccacattgtgaaccac
atggtgagggccaaatgcaaagaggttacgctgcataaagatggacctctgggtgaaacc
gtgctggagtgttacaattgtggctgccgcaatgttttcctcttgggctttatcccagcc
aaagctgactccgtggtggtgctactctgcagacagccctgtgctagtcagagcagcctg
aaggacatcaactgggacagctcacagtggcagcctctcatccaggaccgctgctttttg
tcctggctggtaaagatcccatcagagcaagagcaactccgagctcgtcagatcacggcc
cagcagatcaacaagttggaggaactgtggaaggacaatcccagtgccactctggaggac
ctggagaaacctggcgtggacgaagagcctcagcacgtgctgctgcgctacgaggatgct
taccagtaccaaaacatctttgggcctctggtcaaactggaggctgattatgacaaaaag
cttaaagagtctcagactcaagataatataacagtcaggtgggacctggggttgaacaaa
aagcggattgcctatttcactctgcccaagacggattcaggtgacatgcgactgatgcaa
ggtgatgagatctgcctgcgctacaagggagacttggccccactgtggaagggcattggt
catgtcatcaaagtcccagacaactacggggatgaaattgccattgagctgcggagcagc
gttggagcacctgtggaaatcccacacaacttccaggtggactttgtttggaaatccact
tcttttgacaggatgcaaagcgccctgaaaacgtttgccgttgacgaaacctccgtgtct
ggctacatttaccacaaacttttgggccatgaggttgaagacgtcaccatcaagtgccag
ctgccaaagcgcttcacggccccaggtctgcctgacctgaaccactcccaggtgtacgct
gtaaagacggtgctgcagaggcctctcagtctgatacagggtccacctggaaccggaaag
accgtcacctctgccacaatcgtttatcacctgtctcgacagggaaatggaccggttctg
gtctgtgctcccagtaacatcgctgtggaccagctgactgagaagattgacaagaccggc
ctgaaggtagtccggctgtgcgctaagagccgggaggccatcgagtctcctgtgtctttt
ctggctctccacaaccagatcagcaacatggacagcatgccagagcttcagaagctacag
cagctgaaggatgagaccggcgagctgtcttctgctgatgagaaacgttacagggctttg
aaacgcaccgctgagagggagctgctcatgaacgctgatgtgatttgctgcacctgtgtt
ggagctggagatccccgtctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccactgaacccgagtgcatggttcctgtggttttaggagcaaagcagcttatt
cttgtgggcgaccattgccagcttggtccagtggtgatgtgtaagaaggcagctaaagca
ggtctgtctcagtctctgtttgaacgactggtggttctgggtatccggccaatccggctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatcttctacgaa
ggctccctgcagaatggtgtcaccgcagcggatcgtatcaagaagggctttgacttccag
tggcctcagccagataagcccatgttcttctacgtgacccagggtcaggaggaaatcgcc
agttctggaacctcgtacctcaacaggactgaggcagccaacgttgagaaaatcacgacc
aggttgctcaaagcaggagccaaaccggatcagatcggcatcatcaccccctatgagggc
cagcgctcatacctggtccagtacatgcagttcagtggttcacttcacaccaaactctat
cagcaagtggaaattgccagtgtggacgccttccagggcagagagaaggactttatcatc
ctgtcttgcgttcgtgccaacgagcaccagggcattggtttcctgaacgaccctcgtcgt
ctcaacgtggcgctgaccagagcaaagtatggggtgatcattgtggggaacccaaaagcc
ctctctaagcagcctctgtggaacaacctgctgaactattacaaggagcagaaggttctg
gtggagggacctctgaacaacctgcgggagagtctgatgcagttcagcaagcctcgtaaa
ctggtcaacaccatcaaccctggagggcgctttatgagtactgccatgtatgatgctcgt
gaggcgctcatccccggctccgcctacgaccgcagcagtgctgctggacgtccgtccaac
atgtactttcaaacccacgaccagattgggatgattggcgccgggcctggtcacatggct
gcgatgaatattcccataccctttaacctggtgatgcccccgatgcccccacccagctac
ttgggtcagaccaatggccccgctgcaggccgtggtgctatgaaggggaagcttgggcgc
ggcgggagacaaagggtgcgtggctcgatgggtcagggtaacggacccaacagccaggcc
agccaggatggggcctcgcagtccttctctcaggggcctctgactcagggttacatctcc
atgagccagccctctcagatgagccagcctggcctctcccagccagagctgtcccaggac
agctatcttggtgatgagttcaagtcccaaatcgacgtggctttgtcccaggactcaact
taccagggtgaacgtgcataccagcatggtggggtaactggactgtcacagtactaa
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integrated database retrieval system
