Candidatus Nitrososphaera gargensis: Ngar_c12630
Help
Entry
Ngar_c12630 CDS
T02305
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ngar_c12630 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nga03400
]
Ngar_c12630 (uvrB)
DNA repair and recombination proteins [BR:
nga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ngar_c12630 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ngar_c12630 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
Met_synt_B12
Kinesin
UB2H
Microtub_bd
P-loop_SecA
AAA_24
ABC_tran
HEM4
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFU58203
UniProt:
K0IH77
LinkDB
All DBs
Position
complement(985563..987542)
Genome browser
AA seq
659 aa
AA seq
DB search
MLTSSRSFALAKDAFPPSGDQPEAIEQLVRGVQKGGRQTLLGVTGSGKTYTIANVIARTN
KNTLVISHNKTLAAQLYAEFKEFFPENNVGYFVSFYDYYQPESYIPQTDTYIEKDTEVNE
KIEKMRLEATAMLMSGEPTIIVSTVSCIYSLGSPKEWEKSAITLTKGMEIDRKILIHNLI
EARYERNDMSLMPGNFRAKGDTIDIIPGYSDDIIRVSVFGDEIERISIHDHVSMKKLRDV
NAVKIFPAKHYITDDDSRNSALESIKRELENWLPNLPSELERQRLAQRTKYDLEMIEELG
YCSGIENYSRHLDGRAPGQPPFCLLDFFGDDFLLVIDESHVTLPQLHGMYNGDHTRKKML
IDYGFRLPSSYDNRPLKFEEFEKYLRNVIFVSATPGPYELKSSWQVAEQLVRPTGLVDPK
VEIRPTKNQMEDLIKEIKNRAKKNQRTLVTTLTKRMAEDLAEFLAKNEVRVRYLHSEIEG
LERTQLIRQLRLGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRNTTSLIQTFGRA
ARNLDGAVIMYSDHSTESMKQAIEETERRRKKQLEYNKKHKIKPRTIVKPIPESTKEIGD
MSVETKSMTRQDLVKLAVETEATMKRFAEELDFEKAIMFREKLSKIRKALGEPALAEVS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
ttgctaacaagttctagaagctttgctctggcaaaggatgccttcccgccaagcggtgac
cagcctgaagcaatagagcagctggtcaggggcgtgcaaaagggcgggcgccagacgctc
cttggcgtgactgggagcggcaagacatacacaattgcaaacgtcattgcaaggacaaac
aagaacacgctggtgatctcgcacaacaagacccttgcagctcagctgtatgctgagttc
aaagagttctttccagaaaacaacgtcggctactttgtaagcttctatgattattaccag
cctgaaagctatatcccccagacagatacgtatatcgaaaaggacaccgaagtgaatgaa
aagatagaaaagatgaggcttgaagccaccgcgatgctcatgtccggcgagcccacaata
atcgtgtcaaccgtttcttgcatctattctcttggttcgcccaaagagtgggagaagagc
gccatcacgctgacaaagggtatggaaatcgaccgcaagatactcatacacaatctgatc
gaggcgcgctatgagcgaaatgacatgtcgcttatgccgggcaactttcgggcaaaggga
gacacaattgacatcatccctggctattctgacgacattatccgcgtatccgtatttggc
gacgagatcgagcggataagcatacatgaccatgtaagcatgaaaaagctgcgtgatgta
aacgcagtcaagatatttccggcaaagcactatatcactgacgacgactcgcgcaacagc
gcacttgaatcgataaagcgcgagcttgaaaactggctaccaaacctgccttccgagctg
gagcggcagaggcttgcgcagcgcacaaaatacgatctggaaatgatagaagagcttggt
tattgctctggcattgaaaactattcccgccaccttgacggcagagcgccgggccagccg
cctttttgcctccttgactttttcggtgacgatttcctgcttgtcattgatgagtcgcac
gtcacgctgccgcaattgcatggcatgtataatggcgaccacacccgcaaaaagatgctt
attgactatgggttccgtctgccaagctcctatgacaatcggccgctcaagttcgaggag
tttgagaaatatctcagaaacgtgattttcgtatcggctacgcctgggccatatgagtta
aagtcaagctggcaggtcgccgagcagctagtcaggcccacaggccttgtcgaccctaaa
gtagagatccggcccacaaagaaccagatggaagacctgataaaggagataaagaacaga
gccaagaaaaaccagcgcacgcttgtaacgacgctgacaaaaaggatggcagaggacttg
gcagagtttctggccaagaatgaagtgcgggtgcgctacctgcattctgagattgaaggt
cttgagcgtacccagcttatcagacagctgcgactgggcgagtttgacgcgcttgtcggc
atcaaccttcttagggaaggtctcgacattccggaggtttcgcttgttgcaattctggac
gcagacaaggagggtttcttacgcaacaccacgagcctcatccagacatttggcagggct
gcccgcaacctagacggcgcggtgataatgtattccgatcattctacagaatcgatgaag
caggcaatagaggaaacagagcgcaggcgcaaaaagcagctagaatacaataaaaagcac
aagataaaaccaaggacgatcgtcaagccgatacctgaaagcacaaaagagattggcgat
atgagtgtagagacaaagtccatgacaaggcaggatttggtcaagcttgctgttgaaacc
gaagccacgatgaagaggtttgccgaagagctagactttgaaaaggcgataatgttccgg
gagaagttgagcaagataagaaaggcgcttggagagccggctttggcggaggtgtcctga
DBGET
integrated database retrieval system
