Candidatus Nitrososphaera gargensis: Ngar_c22260
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Entry
Ngar_c22260 CDS
T02305
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03030
DNA replication
nga03410
Base excision repair
nga03420
Nucleotide excision repair
nga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ngar_c22260 (lig)
03410 Base excision repair
Ngar_c22260 (lig)
03420 Nucleotide excision repair
Ngar_c22260 (lig)
03430 Mismatch repair
Ngar_c22260 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nga03032
]
Ngar_c22260 (lig)
03400 DNA repair and recombination proteins [BR:
nga03400
]
Ngar_c22260 (lig)
Enzymes [BR:
nga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ngar_c22260 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
Ngar_c22260 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Ngar_c22260 (lig)
DNA replication proteins [BR:
nga03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Ngar_c22260 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Ngar_c22260 (lig)
DNA repair and recombination proteins [BR:
nga03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Ngar_c22260 (lig)
NER (nucleotide excision repair)
Other NER factors
Ngar_c22260 (lig)
MMR (mismatch excision repair)
Other MMR factors
Ngar_c22260 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PEX-1N
Motif
Other DBs
NCBI-ProteinID:
AFU59156
UniProt:
K0ICR2
LinkDB
All DBs
Position
complement(1730833..1732626)
Genome browser
AA seq
597 aa
AA seq
DB search
MDFAPIVETFEQMEQTSSRLALTEYLVALLRKTPPDIIDKVTYLIQGKLYPDYEGIELGV
AERMVIRAIASSSGKDQLQIEKLYQKTGDLGDAAGEAMKSKSQSTLFSEPMTVERVYSTF
DRVARTTGPGSQETKLRLISSLLNDATAAEGRYIIKFVMGQLRLGIADYTVLDALAVAFT
GDKANRQVLENAYNVSSDLGTVARLLATKGLDAVKSIKITLFKPIRPMLAERIRTAEEAL
ERMEGKAAVEYKLDGERVQLHKGKQNVELFSRRLEKITSHYPDVAEAIKSIKSEVILEGE
VVAINAETGDYLPFQELMHRRRKYGVEEAMENYPVVMNFFDVLYVDGKSKTELTYMERRK
LLKKIIDAVKDDNKVRLIEQTIATKPEEIDRFMAAAIEDGCEGVMIKQLSSTYRAGAREY
AWVKLKREYRSDLADTLDLVVVGALHGRGRRTGKYGALLLAAYDQKTDMFQSVTKVGTGF
TDVHLEQFYNELEKHIINQRHARVQTGMDMDVWFEPNMVIEVIASEITLSPSHAAALNAL
RPGYGLALRFPKFTGKIRDDKKPEDATATEEIVEMYRRQLKVAGPSYAAEAEGEEGG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
ttggactttgcgcccatagtggagacatttgagcagatggagcagacctctagcaggctt
gcgctcaccgaatacctcgtcgccctgttgaggaagacgcctcctgacatcatcgacaag
gtgacctacctcatacagggcaagctgtaccccgactatgaaggcattgagctgggggtg
gcagaaagaatggtcataagggcgatagcgagctcatcgggcaaagaccaactgcagata
gaaaagttataccaaaagacgggcgacctaggggatgcggccggcgaggcaatgaagtca
aaaagccagtccactctcttttcagagcccatgacagttgagcgggtgtattctacattt
gacagggtcgcgcgcaccactggcccgggctcgcaggaaaccaagctgcgccttataagc
agcctgctcaacgacgctactgctgcagaaggccgctacatcataaaattcgtcatgggt
cagctgcggctcgggatagcggactataccgtgcttgacgcgctggcagtcgcgttcact
ggcgacaaggcaaacaggcaggtgcttgaaaacgcatacaacgtttcaagcgaccttggc
acagtcgccaggctgcttgccacaaagggacttgatgccgtcaaatcgatcaagataacc
ctgttcaagccaattcggccgatgcttgccgagcgcatcaggaccgcggaagaagcactt
gagcgcatggagggcaaggctgcagtcgagtacaagctggacggtgagcgcgtgcaacta
cacaagggcaagcagaacgtggaactattttcaaggaggctggaaaagataaccagccac
tacccagacgttgctgaagccatcaagtcgataaaatccgaagtgatactggaaggcgag
gtggttgcgataaacgcggagactggggattatctaccctttcaggaactgatgcaccgc
cggcgcaaatacggtgtagaggaggcgatggagaactatcccgtcgtcatgaactttttt
gacgtgttgtatgtcgacggaaagagcaagacggaactgacctacatggaaagaaggaag
cttctcaaaaagataatcgatgcagtcaaggatgataacaaggtcaggctgatagagcag
acgattgcgaccaagccggaagagatcgaccggttcatggcggctgcgatagaggatggc
tgcgagggagtcatgataaagcagttgtcaagcacgtaccgggcaggcgcaagggagtac
gcgtgggtcaagctaaagcgtgaataccgcagcgaccttgcagacacacttgatctggtg
gtcgtcggcgcgctacacggaaggggcaggcgcacaggcaagtacggcgcgctcctcttg
gctgcatacgaccaaaagacagacatgttccagagcgtcaccaaagtgggcaccggcttt
acggacgtgcaccttgagcagttctacaatgagctcgaaaaacacatcatcaaccagcgt
cacgcccgcgtccagacaggaatggacatggatgtgtggtttgagcccaacatggtgatc
gaggtaattgcttccgagatcacgctcagcccgtcgcacgccgcggcattgaatgcactg
aggcctggctatggtcttgcgctccgctttccaaagttcactgggaaaatccgcgacgac
aaaaagccggaggacgccactgccaccgaggagattgtagagatgtacaggaggcagctg
aaggtggccgggccgtcatatgcagcagaggcagaaggggaagaaggcggctag
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