Nannochloropsis gaditana: NGA_0147500
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Entry
NGA_0147500 CDS
T02917
Symbol
HDAC1_2
Name
(RefSeq) histone deacetylase 1/2
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03082
ATP-dependent chromatin remodeling
ngd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
NGA_0147500 (HDAC1_2)
03083 Polycomb repressive complex
NGA_0147500 (HDAC1_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ngd03036
]
NGA_0147500 (HDAC1_2)
Enzymes [BR:
ngd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
NGA_0147500 (HDAC1_2)
Chromosome and associated proteins [BR:
ngd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
NGA_0147500 (HDAC1_2)
HDAC complexes
Sin3A-HDAC complex
NGA_0147500 (HDAC1_2)
BRAF-HDAC complex
NGA_0147500 (HDAC1_2)
REST complex
NGA_0147500 (HDAC1_2)
SHIP complex
NGA_0147500 (HDAC1_2)
MiDAC complex
NGA_0147500 (HDAC1_2)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
NGA_0147500 (HDAC1_2)
Heterochromatin formation proteins
Other heterochromatin formation proteins
NGA_0147500 (HDAC1_2)
Chromatin remodeling factors
NuRD complex
NGA_0147500 (HDAC1_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
17361931
NCBI-ProteinID:
XP_005855159
UniProt:
K8YR89
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MAAPTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLS
EMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAA
LLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDG
VEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFR
PVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGG
YTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETI
KQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGG
RKEHPLEMMPEGDGTQR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcagccccaacaaaacggcgcatctcctatttctacgactccgacattgggaatttc
cattatgggcaagggcatcccatgaagccccaccgcgtccggatgacgcactccctcgtc
gtgtactactggttgtatcgaaacatggaaatccttcgccccaagcccgtgctgctcagt
gaaatgacccgattccattcggatgattacatcaattttctccgagtgattacacccgac
aacatgcaagagtacatgaggcagctgcagaggtttaatgtcggggaggattgccccgtt
ttcgacggactctttgaattctgtcagctgtacacgagcggatccatcggaggggcggct
ttgttgaaccagaaagaggccgatatcgtcatcaattggtcgggagggctgcatcatgcc
aagaaatcggaggcctcgggcttctgctacgtgaacgattgcgtcctggcgattttggag
ctcctgaagcaccaccaccgggtgctctacatcgacatcgacatccaccacggggacggg
gtggaggaggccttctacaccaccgaccgggtgatgacggtctccttccacaagtttggt
gagtactttccgggcacgggcgacgtgagcgattttgggcacggaaacgggaaaaactac
gcgatcaacttccccttgcacgacgggatggacgacgaaagttttgtctcggtgtttcga
cctgtgattgggaaagtgatggagaccttcgcgccaggagccatcgtccttcaatgcggc
gcagactccttgtcgggcgatcgcctcggctgctttaacttgtccttgaaggggcacgcg
gacgcggtcgccttcgtgaaaagcttcgacgtgcctgtcttggccctgggcggggggggg
tacacgctgcggaacgtgcctcgatgttgggtctatgaaacctccgtcctccaggggaca
gagatcaaggacgacttgcctttccacgattactttgagtactacggccccgactacaaa
ctccacctccccgtctccaacatggagaatcttaacaccaagccatacctggaaacgatc
aaacagcagctgttcaccatcctctcccaggtgagccccacgggcgcgcagatccagacg
ggccagccagggacgagcatgacgcctccggacgcagccttgccggagacggcgcgggaa
agggaaagtgaaatggaagagagggatccggatacgcgggtgggtgatggggggggaggg
aggaaagagcatcccttggagatgatgccggagggggacgggacgcagaggtag
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integrated database retrieval system
