Novosphingobium ginsenosidimutans: FRF71_09680
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Entry
FRF71_09680 CDS
T06189
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRF71_09680 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_09680 (ligD)
Enzymes [BR:
ngf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRF71_09680 (ligD)
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRF71_09680 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEA16379
UniProt:
A0A5B8S4A9
LinkDB
All DBs
Position
complement(1945290..1947722)
Genome browser
AA seq
810 aa
AA seq
DB search
MGREAPLAEYKAKRDFKRTPEPRDKVVSARNGQARRFVVQKHDATRLHWDFRLEVDGVLK
SWAVTRGPSPNPEDKRLAVRTEDHPMDYASFEGTIPEGEYGGGTVMLWDEGTWEPIAGKK
AQDLEKGHLHFVLHGQRMKGEWLLIRLKPRGMEKRENWLLRKIEDACCGPSDSLTERELT
SVATGRTMHDIAEGKPSPKTRRRKRGKGRATPPPFEPVQLATLVDEAPDGPDWLHETKYD
GYRALIACGGGSAVVYTRSGHDWSDKFPDVCAAAATLPVDAALIDGEIMALDAAGNPDFS
ALQEAISAGGRGLSLFAFDLLHLDGEDLRPLPNLDRKARLQALLAGVPSPLHYAEHVLGS
GGEMLKLLCGAGLEGIVSKRADAPYRGKRTQAWLKSKCVARQEFVILGWTGSAARGRAFA
ALLLGRYDGDHLRYAGKVGTGFNERTMQNLAEAMAPLAATDPATAVPASAQRGAHWLRPE
LVAEVAFAEFTGEGILRHARFVGLRGDKPAREVRLERPMPKPADPEVRITHPERVVFPDD
GITKGELADYYRAMAPLLLATMAGRPLSLVRCPDGIGGKCFFQKHGAGNLGKDIGSVRIR
EKDGGEEDYLCVSDAQGVLECVQMGAIEFHAWASHSRHLEQPDRLVFDLDPDEALSFADV
RKAAQDLKRHLADIGLTSFAMLSGGKGVHVIVPLKPQAEWDEVTDFARRFSIALATAEPE
RFVATMSKAKRKGRIFIDWLRNQRGSTAIMPYSVRARAGAPVAAPVSWAELDEFETAAAF
RLADRAQLLERAADRGLAGWGSSSQLLPSV
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgaagccccccttgccgagtacaaggccaagcgcgatttcaaacgcaccccc
gaaccgcgcgacaaggtggtgtcagcccgcaacggtcaagcgcggcggttcgtcgtacag
aagcacgatgccacccggctgcactgggattttcggctggaagtggacggcgtgctgaaa
agctgggccgtcacccgcggcccgagccccaatccggaagacaagcggctcgccgtgcgc
accgaagatcacccgatggactacgccagcttcgaaggcacgatccccgaaggcgaatat
ggcggcgggacagtcatgctgtgggatgaagggacctgggagccgattgccgggaaaaag
gcgcaggatctcgagaaaggccaccttcacttcgtgctgcacggccagcggatgaagggt
gaatggctgctgatccggctgaagccgcgcggcatggagaagcgcgaaaactggctgctg
cgcaagatcgaggatgcctgctgcggcccgtcggacagcctgaccgaacgcgagctgacg
tccgttgccactggccggaccatgcacgatatcgctgaaggcaagccatcgcccaaaacc
aggcggcgcaagcgcggcaaagggagggccaccccgcccccttttgaaccggtccaactc
gccacgctggtggacgaggcacccgacggtcccgattggctgcacgagacgaagtacgat
ggctatcgcgccttgatcgcctgcggcggcggcagcgcggtggtctatacccgctctggc
catgactggagcgacaaatttccggatgtttgcgccgccgctgcaacgctgcctgtcgat
gcggcgctgatcgacggagaaatcatggcgctggatgcggcgggcaacccggacttctcc
gccttgcaggaagcgatctcggccggcggccggggtctcagcctgtttgcctttgacctg
ctccaccttgacggcgaggatctgcgtccgctccccaacctggaccgcaaggcgcggttg
caggccctgctggccggcgttccgtcgccgctgcactatgccgaacacgtcctcggttcg
ggcggcgaaatgctgaagctgctgtgcggcgcgggactggaagggatcgtttcgaaacgc
gccgatgccccctatcgcggcaaacgcacccaggcctggctgaagagcaaatgcgtcgca
cggcaggagttcgtaatcctgggctggaccggctcggcggcgcgcggaagagccttcgcc
gccttgctgctcgggcgctatgatggcgaccatctccgctatgccggcaaggttggcacc
ggcttcaacgagcggacgatgcagaacctggccgaggccatggctcccctcgcagccacc
gacccagccacggccgtccccgcctcggcccagcgcggtgcgcactggctgcggccggaa
ctggtcgcggaagtggcctttgccgagtttaccggtgaaggtatcctgcggcatgcgcgg
tttgtcggcctcaggggtgataagccggcccgcgaggtaagactggagcggcccatgccc
aaacctgccgatcccgaagtgcggatcacccaccccgagcgcgtggtcttcccggatgac
ggcattaccaagggtgaacttgcagactactaccgcgcgatggctccgctgctgctggcg
accatggccgggcggccgctaagcctggtacgttgcccggacgggatcggcggcaagtgc
tttttccagaagcatggcgcgggcaatctgggcaaggacatcggctcggtccggatccgc
gaaaaggatggcggagaagaggactatctctgcgtgtcggatgcgcaaggcgtgctcgaa
tgcgtgcagatgggcgcgatcgagttccacgcctgggccagccattcacggcatctggaa
cagcccgaccgcctggtcttcgaccttgatcccgacgaggcgctgagctttgccgacgta
cgcaaggcagcgcaggatctgaagcgccacctggccgacatcgggctgaccagcttcgcc
atgctatcaggaggcaaaggcgttcacgtgattgtaccgctcaagccccaggccgagtgg
gacgaggtaacggacttcgctcgccgcttctcgatcgccctggcaaccgccgagccggag
cggtttgttgcgaccatgtccaaggccaagcgcaagggccggatcttcatcgactggctg
cgcaaccagcggggctcgactgcgatcatgccctattcggtgcgggcccgggccggcgcg
ccggtggcggcgccggtcagttgggcagagctcgacgaattcgagacggcggctgccttc
cgcttggccgaccgcgcccagctgctcgaacgggctgccgatcgcgggctggctggctgg
ggtagctccagccagctcctgcccagcgtttag
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