Neorhizobium galegae bv. orientalis HAMBI 540: RG540_CH45360
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Entry
RG540_CH45360 CDS
T03244
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ngg
Neorhizobium galegae bv. orientalis HAMBI 540
Pathway
ngg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ngg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RG540_CH45360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngg03400
]
RG540_CH45360
Enzymes [BR:
ngg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RG540_CH45360
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RG540_CH45360
DNA repair and recombination proteins [BR:
ngg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RG540_CH45360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
CDN50677
UniProt:
A0A068SWJ7
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All DBs
Position
4644955..4645833
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AA seq
292 aa
AA seq
DB search
MPELPEVETVRRGLAPAMEGAVIARLELNRPDLRFPLPENFANAVNERRIVSLGRRAKYL
LIDLEDDLTVISHLGMSGSFRIENDALAEFHHPRSKDQKHDHVVFHLRQNEGLLRVIYND
PRRFGFMQLWKRSELDLYPAFAELGPEPTGNALDADYLAARLAGKNQPLKGALLDQTVIA
GLGNIYVCEALWRAHLSPKRAAGSVVTKTGRPNKELVLLNQSIRDVIADAIAAGGSSLRD
HIQTDGSLGYFQHSFSVYDREGGACRTLGCGGTVARITQAGRSTFYCPVCQK
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgccagaggtggaaaccgtccggcgcggtctcgccccggcaatggaaggt
gcggtgatcgccaggctggagctcaaccgtccggacttgcgctttccgcttccggagaat
ttcgccaatgccgtcaacgaacgccgtatcgtctcgctcggcaggcgcgccaaatacctg
ctgatcgacctggaggacgatctcaccgtgatcagccatctcggcatgtcgggatcgttt
cggatcgagaacgatgcgctcgccgagttccaccatccacgttcgaaagatcagaaacac
gatcatgtcgtcttccatctgagacagaatgaaggcctgctgcgcgtcatctataatgac
ccgcgccgcttcggcttcatgcagctgtggaagcgcagcgagctcgatctttatccggcc
tttgccgagctcggaccggaaccgacgggcaatgcactcgatgcggactatctggcggcg
agattggcgggcaagaaccagccgctcaagggcgcgctgctcgaccagacggtgatagcg
ggtctcggcaatatctatgtctgcgaggcgctgtggcgcgcgcatctgtcgccgaaacgc
gccgccggcagtgtcgtgaccaagaccggcaggccgaacaaggagctggtccttctcaac
cagtcgatccgcgacgtcatcgccgatgcgatcgccgccggaggttcgtcgcttagagac
catatccagacggatggctcgctcggttatttccagcactccttctccgtctacgaccgg
gaaggcggcgcttgccgcacgctgggctgcggcggtaccgtggcacgcatcacccaggcg
ggccgctccacattctattgcccggtctgccagaaataa
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