Nannospalax galili (Upper Galilee mountains blind mole rat): 103726857
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Entry
103726857 CDS
T03372
Symbol
Upf1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03013
Nucleocytoplasmic transport
ngi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103726857 (Upf1)
03015 mRNA surveillance pathway
103726857 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103726857 (Upf1)
Enzymes [BR:
ngi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103726857 (Upf1)
5.6.2.5 RNA 5'-3' helicase
103726857 (Upf1)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103726857 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103726857 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103726857
NCBI-ProteinID:
XP_008822751
UniProt:
A0A8C6S357
LinkDB
All DBs
Position
Un
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGAGGP
GGTGAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSY
YKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPATGRGTP
KSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVVSQPFSQGALTQGYVSMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgcttggcgccgacacacagggctccgagttcgagttcaccgacttcaccctc
cccagccagactcagacgccccccggcggcccgggcggccccggcggagcaggaggcccg
ggcggaacaggcgcgggcggcgcggccggccagctcgacgcgcaggttggtcccgagggt
atcttgcagaatggggccgtggatgacagtgtggccaagaccagccagttgctggcagag
ctgaacttcgaggaggatgaagaggacacctattacaccaaggacctccccatccatgcc
tgcagttactgcggaatacacgaccctgcctgcgtggtttactgtaataccagcaaaaag
tggttctgcaacggccgtggaaatacttctggcagtcacattgtaaatcacctggtgaga
gcgaaatgcaaggaggtgacactgcacaaggacgggccactgggtgagaccgtgctggag
tgctacaactgcggctgccgcaacgtcttcctgctgggcttcatccccgccaaggccgat
tcggtggtggtactactgtgtaggcagccctgtgccagccaaagcagcctgaaggacatc
aattgggacagctctcagtggcaacccctgatccaggaccgatgcttcctgtcctggctg
gttaaaatcccctctgagcaggagcagctgcgggcgcgacagatcacagcacagcagatc
aacaagctggaggaactgtggaaggagaacccttcagccaccctggaggacctggagaag
ccgggcgtggatgaggagccacagcatgtgctcctgcggtatgaggacgcctatcagtat
cagaacatcttcgggccgctggtcaagctggaggctgactatgacaagaaactaaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggcctcaacaagaagagaatc
gctttcttcaccttgcccaagactgactctggtaatgaggacttagtcataatttggtta
agagacatgcgactcatgcagggtgacgagatctgcctgcgttacaaaggggacttggcg
cccctgtggaaagggatcggccatgtcatcaaggtccctgacaattatggcgatgagatc
gccattgaactccgcagcagcgtgggtgcccctgtggaggtgacccacaacttccaggtt
gatttcgtgtggaagtcgacctcctttgataggatgcagagtgcactgaagacctttgcc
gtagacgagacttccgtgtcagggtatatatatcacaagcttctgggccatgaggtggag
gatgtggtcatcaagtgtcagctgcccaagcgcttcacagcacaaggacttcctgacctc
aaccactctcaggtatatgctgtgaagactgtgctgcagagaccattgagcctcatccag
ggcccgccaggcaccggcaagaccgtgacatcagccaccattgtctaccacctggctcgg
cagggaaatgggcccgtgcttgtctgcgccccaagcaacatcgccgtggaccagctcaca
gagaagatccaccagacaggactgaaggttgtgcgtctctgtgccaagagccgggaggcc
attgattcccctgtgtcctttctggcactacacaaccagatcaggaatatggatagcatg
cctgaactgcagaagctgcagcagctgaaggatgagacgggtgagctgtcatcagcggat
gagaagcggtaccgagcactcaagcgcacagctgagcgagagctgctcatgaatgcagat
gtcatctgctgcacctgtgtgggcgccggcgacccgaggttggccaagatgcagttccgt
tccatccttattgatgagagcacccaggccactgagcctgagtgcatggtgcctgtggtc
cttggtgccaagcagctgatcctcgtgggcgaccactgccagctgggcccagtggtgatg
tgcaagaaggcggccaaggcggggctgtcacagtcgttgtttgagcgcttggtggtgctg
ggcattcggcccatccgtctgcaggtgcagtaccgcatgcaccctgcgctcagtgccttc
ccatctaacatcttctacgagggctcattgcagaatggcgtcactgcagcggaccgtgtc
aagaagggctttgactttcagtggccacagcctgacaagcccatgttcttctatgtgacc
cagggccaggaggagattgccagctctggcacatcctaccttaacaggacggaagcagcc
aacgtggagaagatcaccacaaagctgttgaaggcaggtgccaagccggaccagattggc
atcatcacaccctatgagggccagcgctcctacctggtgcagtacatgcagttcagcggc
tccctgcacaccaagctctaccaggaggtggagatcgccagcgtggatgccttccagggt
cgtgagaaggacttcatcatcctgtcctgtgtgcgggccaacgagcaccagggcattggc
ttcctcaatgacccaaggcggctcaatgtggcacttaccagagccaggtatggtgtgatc
attgtgggtaacccgaaggcactgtcaaagcagccactgtggaaccaccttctgagctac
tacaaggagcagaaggcactggtggagggcccgctcaacaacctgcgagagagcctcatg
cagttcagcaagccacgcaagctcgtcaacacagtcaacccgggggcccgcttcatgacc
acagccatgtatgatgcgcgtgaggccattatccctggatctgtctatgaccgcagcagc
cagggccggccctcaaacatgtacttccagacccacgaccaaattggcatgataagtgca
ggccccagccatgtggctgccatgaacatccccatccccttcaacctggttatgcccccc
atgccaccacccggatacttcggacaagccaacggaccggctacaggccggggtactccg
aaaagcaagactggccgtggaggccggcagaagaaccgttttgggcttcctgggcccagc
cagaccacccttcccaatagccaggccagccaggatgtggtctcccagcccttctcacaa
ggcgccctcacacagggatatgtgtccatgagccaaccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggcgatgagtttaaatcacagatt
gacgtggcactgtcacaagactccacgtatcagggagagcgggcataccagcacggcggg
gtcactgggctgtcccagtactag
DBGET
integrated database retrieval system
