Nannospalax galili (Upper Galilee mountains blind mole rat): 103727520
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Entry
103727520 CDS
T03372
Symbol
Chd4
Name
(RefSeq) chromodomain helicase DNA binding protein 4
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03082
ATP-dependent chromatin remodeling
ngi05165
Human papillomavirus infection
ngi05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103727520 (Chd4)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
103727520 (Chd4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
103727520 (Chd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ngi03036
]
103727520 (Chd4)
Chromosome and associated proteins [BR:
ngi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103727520 (Chd4)
Chromatin remodeling factors
NuRD complex
103727520 (Chd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
PHD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
103727520
NCBI-ProteinID:
XP_008823627
LinkDB
All DBs
Position
Un
AA seq
1940 aa
AA seq
DB search
MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHAENEEDPEEDLSEAETPKLKKKKKPKKP
RDPKIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEVTLRSDSEGSDYTPGKKKKKKL
GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHMFSEEDYRTLTNYKA
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESM
VTATEVAPPPPPVEVPIRKAKTKEGKGPNARRKPKGSPRVSDAKKPKPKKVAPLKIKLGG
FGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT
AVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ
WEAKEENSEGEEILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPL
PEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPE
RQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKN
KDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVE
IQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLD
ATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLV
SAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKE
ASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLL
TGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKA
DVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCN
HPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLD
LLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADT
VIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVR
PGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDR
NQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRH
HYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRGVCGRPRPPPTGRSTRAVGPAHLPSLP
PDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIE
VLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGA
DGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEVEENKKMSQ
PGSPSPKTPTPSTPGDTQPNTPAPVPPVEDGIKIEENSLKEEESTEGEKEVKSTVSEATV
ECGQPPTSAPEEEKVLAEPPEGEEKAEKAEVKERTEEPLETEPKGVAEVEKVEEKSAIDL
TPIVVEDKEEKKEEEEKKEVMLQNGETPKDLSDEKQKKNIKQRFMFNIADGGFTELHSLW
QNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAILNEPFKGEMNRG
NFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRFAEVECLAESH
QHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNI
LSRLANRAPEPPPQQVAQQQ
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggcctcggctccccgtccccctgctcagcgggcagcgaggaggaggatatg
gatgcacttctgaacaacagcttgcccccaccccatgcagaaaatgaagaagacccagaa
gaggatttatcagaagcagagactccaaagctcaagaagaagaaaaagcccaagaagcct
cgggaccctaaaatccctaaaagcaagcgccaaaagaaggagcgtttactcttatgccgg
cagctgggggacagctctggggaggggccagagtttgtggaggaggaagaagaggtgact
ctgcgctcagacagtgagggcagtgactatactcctggcaagaagaagaaaaagaagctt
ggacctaagaaagagaagaagagcaaatccaagcgaaaggaagaggaagaggaggatgac
gatgatgatgattcaaaggagcctaaatcatctgctcagctcctggaagactggggcatg
gaagacattgaccatatgttctcagaggaagattaccggactctcaccaactacaaggcc
ttcagccagtttgtccgacccctcattgccgccaaaaatcccaagattgcggtctccaag
atgatgatggtcttgggtgcaaagtggagggaattcagtaccaacaaccctttcaagggc
agttctggagcttctgtggcagcagcggcagcagcagctgtggctgtggtggagagcatg
gtgacagctactgaagttgcacctccccctccccctgtggaggtgcctatccgaaaggcc
aagactaaggagggcaaaggtcccaatgctcggaggaagcctaagggcagcccacgggta
tctgatgccaagaagcctaaacccaagaaagtagctcctctgaaaatcaagctggggggt
tttggttccaagcggaagagatcttcgagtgaggatgatgacttagatgtggaatctgac
ttcgatgatgccagtatcaatagctattctgtttcggatggttctaccagtcgtagtagt
cggagccgcaagaaactccggacgacgaaaaagaaaaagaaaggcgaggaggaggtgact
gctgtggatggttatgagacagaccaccaggactattgcgaggtgtgccagcaaggcggt
gagatcatcctgtgtgatacctgtccccgagcctaccacatggtgtgcctggacccagac
atggaaaaggcccccgagggcaagtggagctgcccacactgtgagaaggagggcatccag
tgggaagctaaagaggagaattcggagggtgaggagattctggaagaggttgggggagac
ccagaagaggaagatgaccaccatatggaattctgtcgagtctgcaaggatggtggggag
ctcctgtgctgtgacacctgcccttcttcctaccatatccactgcctgaaccccccactt
ccagagatccccaatggcgaatggctctgtccccgttgtacttgtccagctcttaagggc
aaagtacagaagatcctaatctggaagtggggtcagccaccatctcccacaccagtgcct
cggcctccggatgctgatcccaatactccctctcccaagcccttggaaggtcggccagag
cggcagttctttgtgaaatggcagggcatgtcttactggcactgctcctgggtgtcagaa
cttcagttggagctgcactgtcaggtaatgttccgaaactatcagcggaagaatgatatg
gatgagccaccttctggggactttggtggcgatgaagagaagagccgaaagcgaaagaac
aaagaccctaagtttgcagagatggaggaacgcttctatcgctatgggataaagcctgag
tggatgatgattcacagaatcctcaaccatagtgtggacaagaagggtcatgtccactac
ttaatcaagtggcgagacttaccctatgatcaggcatcttgggagagtgaggatgtggag
atacaggattatgacctgttcaaacagagctattggaatcacagagagctaatgaggggt
gaggaaggacgaccaggcaagaagctcaagaaggtgaagctgaggaaactggagaggcct
ccggagactccaacagttgatccaacagtgaagtatgagcgacaaccagagtacctggat
gccacaggtggaaccttgcacccctaccaaatggaaggcttaaactggctgcgcttctcc
tgggctcagggtaccgataccatcttggctgatgagatgggccttgggaaaactgtacag
acagcagtctttctctattccctctacaaagagggtcattccaaaggccccttcctagtg
agtgctcctctttctaccatcatcaactgggagcgggagtttgaaatgtgggctcctgac
atgtatgtggtgacctatgtgggtgacaaggacagccgtgccatcatccgggagaatgag
ttctcctttgaagacaatgccattcgtggtggcaagaaggcctcccgcatgaagaaagaa
gcatctgtgaagttccatgtgctgctgacatcctatgaattgatcaccattgatatggcc
atcttgggttctatcgattgggcctgcctcattgtagatgaagcccatcgactgaagaac
aatcagtctaagttcttccgggtcttgaatggttactcactccagcacaagttattgctg
actgggactccattacaaaacaatcttgaggaattgtttcatttgctcaactttctcacc
cctgagaggtttcacaatttggaaggcttcttggaggagtttgcggacattgccaaagag
gaccagattaaaaaacttcatgacatgctggggcctcacatgttgcggcggctcaaagct
gatgtgttcaagaatatgccatccaagacagaactgattgtgcgtgtggagctgagccct
atgcagaagaagtactataagtatatccttactcggaattttgaagcacttaatgctcga
gggggtggcaaccaggtttctctgctcaatgtggtgatggatcttaagaagtgctgcaac
cacccgtacctcttccctgtggcagcaatggaagcccctaagatgcctaatggcatgtac
gatggcagtgccctaatcagagcatctgggaaattgttgctgctgcagaagatgcttaag
aaccttaaagagggggggcatcgtgtactcatcttctcgcagatgaccaagatgctggat
ctgctagaggactttttggaacatgaaggttataaatatgaacgtattgatggtggaatc
actgggaacatgcgtcaagaggccattgaccgcttcaatgcacctggtgctcaacagttc
tgcttcttgctttccactcgggctgggggcctcgggatcaatctggccactgctgacaca
gttattatatatgactctgactggaaccctcataatgatatccaggcctttagcagagcc
catcgtattggccaaaataagaaggtgatgatctaccggtttgtaacccgagcatcggtg
gaggagcgcatcacgcaggtggcaaagaagaagatgatgctcacgcatctagtggtgcgg
cctgggctaggctccaagactggctctatgtccaaacaggaacttgatgacatcctcaaa
tttggtactgaggagctattcaaggatgaagctacagatggaggcggagacaacaaagag
ggagaagacagcagtgttatccattatgatgataaggccattgagcgactattggaccgc
aaccaggatgagactgaagacacagaattgcagggcatgaatgaatatttgagctctttc
aaagtggcccagtatgtggttcgggaagaagaaatgggggaggaagaggaggtagaacgg
gaaatcataaaacaggaagaaagtgtggatcctgactactgggagaaattgctgcggcac
cattatgagcagcagcaagaagatctagcccgaaatctgggcaaaggaaaaagaatccgt
aaacaggtcaactacaatgatggctcgcaggaggaccgaggtgtgtgtggccggccccgc
cccccacccacgggccgttccactagagcagtgggccccgctcatctgccctctctccct
ccagattggcaggacgaccagtccgacaaccagtccgattattcagtggcctcagaggaa
ggtgatgaagactttgatgaacgatcagaagctccccgcaggcccagtcgtaagggcctg
cggaatgataaagataagccattacctcctctgttggcccgagttggtggaaatattgaa
gtacttggttttaatgctcgtcagcgaaaggcatttcttaatgcgattatgcgatatggg
atgccacctcaggatgcttttactactcagtggcttgtgagagatcttcgaggcaagtca
gagaaagagtttaaggcttatgtgtctctcttcatgcggcatttgtgtgagccaggggct
gatggggcagagacttttgccgatggtgtcccccgagaaggcctttctcgtcagcatgtt
cttactaggattggtgtcatgtccttgattcgcaagaaggttcaggagtttgaacatgtt
aatgggcgctggagcatgcctgaactggctgaagtagaggaaaacaaaaaaatgtctcaa
ccagggtcaccctctccaaagactcctacaccttccactccaggggacactcaacccaat
actcctgcacctgtcccacctgttgaggatgggataaagatagaggaaaatagcctcaaa
gaagaagagagcacagaaggagaaaaggaagtgaagtctacagtctctgaggcgactgtg
gagtgtggacagcccccaacctctgccccagaggaggaaaaggtccttgctgaacctcct
gagggagaggagaaagcagaaaaggcagaggtgaaagagagaacagaggagcctttggag
acagaacccaaaggtgttgctgaggtggagaaagtggaggagaagtcagcaatagatctg
acccctatcgtggtggaagacaaagaagagaagaaagaggaagaggagaaaaaggaggtg
atgcttcagaatggagagactcccaaggaccttagtgatgagaagcagaagaaaaacatc
aaacagcgtttcatgttcaacattgcagatggtggtttcactgagttgcactccctttgg
cagaatgaggagcgagcagccacagtcaccaagaagacttatgagatctggcatcggcgg
catgattactggctgctagctggcattataaatcatggttatgctcggtggcaggacatc
cagaatgacccacgctatgccatcctcaatgaacctttcaagggtgaaatgaatcgtggc
aatttcttagagatcaagaataaatttctagctcgaagattcaagctcttagaacaagcc
ctggtgattgaggagcagcttcgcagggcggcctacctgaacatgtcagaggacccctct
cacccatctatggcccttaacacccgttttgctgaggtggagtgtttggcagaaagtcac
cagcacctgtccaaggagtcgatggcaggaaataagccagccaatgcagtcctgcacaaa
gttctaaaacagctggaagaactgctgagtgatatgaaagctgatgtgactcgactccca
gctaccattgcccgaattcccccagttgctgtgaggttacagatgtcagagcggaacatt
ctcagccgcctggcaaacagggcacccgaacctcccccacagcaggtagcccagcagcag
tga
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integrated database retrieval system
