Nannospalax galili (Upper Galilee mountains blind mole rat): 103732421
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Entry
103732421 CDS
T03372
Symbol
Lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03030
DNA replication
ngi03410
Base excision repair
ngi03420
Nucleotide excision repair
ngi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103732421 (Lig1)
03410 Base excision repair
103732421 (Lig1)
03420 Nucleotide excision repair
103732421 (Lig1)
03430 Mismatch repair
103732421 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngi03032
]
103732421 (Lig1)
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103732421 (Lig1)
Enzymes [BR:
ngi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103732421 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
103732421 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103732421 (Lig1)
DNA replication proteins [BR:
ngi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103732421 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103732421 (Lig1)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103732421 (Lig1)
NER (nucleotide excision repair)
Other NER factors
103732421 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
103732421 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
103732421
NCBI-ProteinID:
XP_008829215
LinkDB
All DBs
Position
Un
AA seq
983 aa
AA seq
DB search
MQRSIMSFFQPSKEGKAKKLEKETPKNTREKEPPPKVALKERNGVVPESDSPVKRPGRKV
AQVLSSEGEEEDEALATPKGQKLLSDSSPSPDTCPENSPFLASSPPMDVSPSGFPKRRTA
RKQLSKRTNQDVLKDQKEDKDREAKKRKTEETETPRENLTEAKEVKQKDDEGDQATPGSE
PTTPPKTPKTPIRKQLLKRMNRDVLEEQKEEKDRGTKKRKKEEAEIPSLTETKEAKQKEE
EEGDKPTTPPETLKTPKAVTLAKKEKVPVSKASGKQEPQEEEQSKPPARGARTLNSFFIP
RKPAAKSEVKQEESSTPRKEETKGALNPTGYNPAKNNYHPIEDACWKVGQKVPFLAVART
FEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLTLNRLGPPQQGLELGVGDGVLL
KAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTTSGVFSKFRDIARLT
GSASMAKKMDIIKGLFVACRHSEARFIARSLSGKLRLGLAEQSVLAALAQAVSLTPPGQE
FPPPVVDVGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLEHLPEHCKLS
PGVPLKPMLAHPTRGVGEVLKRFEEADFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNT
GKYPDIISRIPKIKLPSVASFILDTEAVAWDREKKQIQPFQVLTTRKRKDVDASEIQVQV
CLYAFDLIYLNGESLVRQPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSV
KDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRY
GGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHW
LDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKKPEEATTSAQVAC
LYRKQSQIQNQQSSGSDSDPEDY
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtagtatcatgtcattttttcaaccttcaaaagagggtaaagcaaagaagctg
gaaaaggagacccccaagaacaccagagagaaggagccccctccaaaggtggcactgaag
gagaggaatggagtggtacctgagagtgactctccagtgaagaggccagggaggaaggtg
gcccaggtcctcagcagcgaaggggaggaagaagatgaagcccttgccacccccaaaggc
cagaaacttctttcagactcttcccccagccctgacacatgtcctgagaacagccctttc
cttgccagcagtcctcccatggatgtgtccccatcagggttcccgaagcgtcgcacagct
cggaagcagctgtcaaaacggacaaatcaggatgttttgaaagatcagaaagaggacaaa
gacagagaagccaagaagaggaagacggaagaaacagagaccccaagggaaaacctcaca
gaggccaaagaggtaaaacagaaggacgatgagggcgaccaagccacaccaggctctgag
cctacaacaccacctaagaccccaaagacccccattcggaagcagctcctgaaacggatg
aatcgggatgttctggaagagcagaaagaggaaaaggacagaggaaccaagaaaaggaag
aaggaagaagcagagattccaagccttacagagaccaaagaggcaaaacagaaggaagaa
gaggagggggacaagcccacgacaccacccgagaccctaaagacccccaaagcagtgacc
ctggcaaagaaagaaaaggttccagtatccaaggccagcgggaaacaggagcctcaggaa
gaggagcagagcaagcctcctgccagaggggctcggacgcttaacagcttctttatcccc
cggaaaccagcagccaagtctgaagtgaaacaagaggagtcgagtactccaaggaaggag
gagaccaagggagccctcaacccaacaggctacaatcctgccaagaacaactatcatccc
atcgaagatgcttgctggaaagtcggccagaaggtcccttttctcgctgtggcccggaca
tttgagaagattgaggaggtttctgctcggctcaggatggtggagaccctgagcaacctg
ctgcgttccgtggtggccctgtcgcctccagacctgctccctgtcctctacctcactctc
aaccgcctcgggccaccccagcagggactggaactgggcgttggtgatggtgtcctcctc
aaggcagtggcccaggccacaggtcggcagctggagtcagtccgagctgaggcagctgag
aagggcgacgtggggctggtggcagagaacagccgcagtacccagagactcatgctgccc
ccacccccgctcaccacctcgggggtcttctccaaattccgagacatcgccaggctcact
ggtagtgcttccatggccaagaagatggacatcatcaagggcctgtttgtcgcctgccgc
cactcagaagcccggttcattgccaggtccctaagtggaaagctacgccttgggttggct
gaacagtcggtactggccgcccttgcccaggctgtgagccttacaccccctggtcaagaa
tttcccccacctgtggtggatgttggaaagggcaagacagcagaggccagaaagacatgg
ttggaggaacaaggcatgatcttgaagcagaccttctgtgaggtgcccgatctggatcga
attgtccctgtgttgttggaacatggcctggaacatctgccagagcactgcaagctaagc
ccaggggtccctctgaaaccgatgctggcccatcccactcgtggtgttggtgaggtcctg
aaacgctttgaggaggcagatttcacctgcgagtacaaatacgacggacagcgggcacag
atccatgttctagaaggtggagaggtaaagatcttcagcaggaaccaggaggacaacaca
ggaaagtaccccgacatcatcagtcgcatccctaagatcaaactcccctcagtcgcatct
ttcatcctggacactgaagctgtggcctgggaccgggagaagaagcagatccagccattc
caagtgctcaccactcgcaaacgcaaggatgttgatgcatcagagatacaagtgcaggtg
tgtttatatgccttcgacctcatctacctcaacggagagtccctggtccgacagcccctg
tctcgccgccggcagctgctccgggagaactttgtggagacagagggtgagtttgtcttc
gccacctccctggataccaaggacactgagcagattgctgagttcttggagcagtcagtg
aaagactcctgcgaggggctgatggtgaagaccctggatgtcgacgccacgtacgagatt
gccaagaggtcacacaactggctcaagctgaagaaggactaccttgatggtgtcggcgac
accctggaccttgttgtaatcggcgcctatctgggccgggggaagagggctggccggtac
gggggcttcctgttggccgcctacgacgaggagagtgaggagctgcaggccatatgcaag
cttggaactggattcagtgatgaggagctggaagaacatcaccagagcctgcaggccctg
gtgctgcccaccccacgcccatatgtgcgcattgatggagccgtggcccctgaccactgg
ctggacccaagtgctgtgtgggaggtgaagtgcgctgatctctccctgtcccccatctac
cccgctgcacggggcctggtggacagtgacaaagggatctcccttcgcttccctcggttc
attcgtgtccgtgaagacaagaagccagaggaggccaccaccagtgcccaggtggcctgc
ctgtaccggaagcaaagtcagattcagaaccagcaaagctcaggctcggattccgaccct
gaagattactaa
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