Nannospalax galili (Upper Galilee mountains blind mole rat): 103742982
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Entry
103742982 CDS
T03372
Symbol
Pcf11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103742982 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngi03021
]
103742982 (Pcf11)
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103742982 (Pcf11)
Transcription machinery [BR:
ngi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103742982 (Pcf11)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103742982 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
103742982
NCBI-ProteinID:
XP_008842411
LinkDB
All DBs
Position
Un
AA seq
1704 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVSQIPTMTVKTPHQVPVQPDKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKDFVMNTLNQSDTKTSKTVPSEKVNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDEDI
KEKRKTADKKDKDEHVKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLTPKAGKIRQSGLKQSHMEEFTPPSR
EERNVKRSTKQDVRDPRRLKKMDEERPQETASQHSMKLGAEPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVPRDGPAKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQIGGGCPLRFEGPPGPVG
APLRFEGPIGQAGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGNLR
FEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFEGPHGQPGGGIRFEGPLLQQ
GVGMRFDGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PSVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPG
PQRFDGPPGQQVQPRFDGVPQRFDGPQHQQGSRFDIPLGLQGTRFDSHPSQRIESVSFNQ
TGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQNFSSPLNRTPGHYFD
EKNLQSSQFGNFGSLPAPMPVGNIQTPQQVSSLDASSSICKIRKSTPKVLTGVAQPVPFG
QGQQFLPVHPQNPGAFIQNPSGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSAT
TQVNEVAAQPPAEEEEDQNEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFT
TSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEK
VHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDG
KIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDTP
PACTEESIATPTEIKTENDTVESV
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgttggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgtcatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgccacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttct
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgccccctaatgtgaatacatctagtatccat
gtgaatcctaaatttttaaataaatcgcctgaggagccttcaacacctggcacagtggtc
agttcccccagtatctcaactcctccaattgtacctgacatacaaaagaatcttacccaa
gaacaactaataaggcaacagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttggaacaagctaaggcacaattggcagtatctcttagcgtt
cagcaggagacagccaacttgggtcctggatcagcaccatctaaattacatgtttcacaa
attcccactatgacagttaaaactccccatcaggttcctgtgcaacctgacaaaagccga
ccaggcccatccttacaaatccaagatttgaaaggaactaaccgggatccccgtcttaac
aggatgagccaacattcttctcatggcaaagaacagagtcataggaaagattttgtaatg
aacacattaaaccagtctgatactaaaacaagtaaaactgtaccctctgaaaaagtaaat
tcatccaagcaagaaaaaagcaaatcaggtgaaaaaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacactaaagacttgaaaaatcaagaatctgaaagtatgaggttgtctgatatgaacaaa
agagaccccagattaaagaaacatcttcaggataaaaccgatggtaaagatgaagatata
aaagaaaagagaaaaactgcagacaaaaaagataaagatgagcatgtgaaatcatctgaa
cacagactgattggaagtagaagtaaaataataaatggcattgtccaaaaacaggacatg
gtaacagaagaactggaaaaacaggggacaaaaccagggagatctagtactagaaagcga
tcaagatcaagatcacccaagtctcggtcaccaattatacattccccaaagagaagagat
aggcggtcacccaaacgaaggcaaagaagtatgtcaccaaccttgacacccaaagctgga
aagattcgtcagtcaggacttaaacagtcacatatggaagagtttacgccaccttccagg
gaagaaagaaatgttaagagaagtactaaacaggacgttcgagatccaagacgattgaaa
aaaatggatgaggagcgaccacaagaaactgcaagtcagcattctatgaagttgggtgct
gaaccaaaggagaatatagaaaactggcaaagttccaagtctgccaaaagatggaaatcg
ggttgggaagaaaataaaagcttacagcagggtgatgaacatagtaagtctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtgcgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgaacaagtctctgctaaaggtgtacgtgaagaacagagatctccattcaatgac
cgttttccgcttaagcgacctagatatgaagattcagataaaccatttgtagatagccca
gcatcaagatttgctggcctcgatacaaatcagcgacttacagctttagctgaagatcga
ccattatttgatggacctggtaggccgtcagtaccaagagatggcccagccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcgccaggacaaatggggggaggaggccctatgagatttgaaggacca
caaggtcagataggtggtgggtgccctttgagatttgaaggccctccaggtccagtcgga
gcgcccttgcggtttgaagggccaattggtcaagcaggaggtggttttcggtttgaaggt
tctcctggtcttaggtttgagggatctgcaggtggcttgcgatttgaaggaccagggggt
cagcctgttggtggtctcagatttgaaggacatcgtggtcagcctgtgggtaatctaagg
tttgagggacctcatggacagcctgtgggtggtcttagatttgataatccccgaggtcag
cctgtaggtggtcttagatttgagggtggtcatggtccatcaggggctgcaattaggttt
gaaggacctcatggtcagccaggtggtggtatcagatttgagggccctttgctacagcaa
ggagttggaatgagatttgatggtccccatggtcagtctgtagctggtctgagatttgaa
gggcaacataatcaactaggtgggaaccttagatttgagggtccacatggtcagcctggg
gttgggattaggtttgaaggacctttagttcaacaaggaggtggaatgagatttgagggt
ccttcagtaccaggaggtggcctgagaattgaagggcctttgggtcaaggtggtcctaga
tttgaaggttgtcactcactaaggtttgatgggcagccaggtcagccatcacttttgcca
agatttgatggattacatggccagccaggtcctagatttgaaagaactggtcagccagga
ccacagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgtacct
caaagatttgatggtccacagcaccagcaaggatcaaggtttgatattcctcttggtcta
caaggtacacgatttgacagtcatccttcacaaaggattgagtcggtatctttcaatcag
actggcccatataatgatccacctggcaatgcttttaatgctccatctcaaggactacag
ttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacat
ggccctggaaaccagaatttctcaagtccccttaacagaactcctggacactattttgat
gaaaagaatcttcagagttctcagtttggaaactttggcagtttacctgctccaatgcca
gtaggaaatattcagacacctcaacaggtttcatcgctggatgccagttcttctatttgt
aaaataaggaaaagcacccccaaggttctgactggtgttgcgcagccagtaccatttggc
caaggacaacaatttttaccagttcatccacaaaatcctggcgcttttattcaaaatcct
tcaggaggacttcctaaggcatatcctgataatcatctcagtcaggtggatgtaaatgag
ttgttttcaaaactgctaaaaacaggaattcttaaattgtcacagcccgattcagctacg
acacaagtaaatgaagttgctgctcagcctcccgctgaagaggaagaagatcaaaatgaa
gatcaagatgttccagatcttactaatttcacaatagaagaattaaaacaacgctacgac
agtgttataaaccggctatacactggtattcagtgttactcttgtggaatgaggtttaca
acatcgcagacagacgtatatgctgatcacttggactggcattatcggcaaaatagaact
gagaaagatgttagcagaaaagtcactcacagacgttggtactacagtctaacagactgg
atagaatttgaggaaatagctgatctagaagaacgtgcaaagagccaatttttcgaaaag
gttcatgaagaagtcgtcctcaaaactcaggaggctgctaaagaaaaggagttccaaagc
gtgcccgccggaccggctggagcagttgagagttgtgaaatctgtcaagaacaatttgaa
caatactgggatgaagaggaggaggaatggcacttaaaaaatgctattagggtagatgga
aagatttatcatccatcatgttatgaagattatcaaaatacatcttcttttgattgtaca
ccatctccaagcaagacaccagtggaaaaccctttgaacattatgttgaacattgtcaaa
aacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacaaattgatacccca
ccagcttgtacagaagaaagcatagcaacacccactgaaattaaaacagaaaatgataca
gtcgagtcagtttaa
DBGET
integrated database retrieval system
